View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17941_low_53 (Length: 236)

Name: NF17941_low_53
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17941_low_53
NF17941_low_53
[»] chr3 (5 HSPs)
chr3 (84-221)||(52634181-52634318)
chr3 (1-52)||(51665818-51665869)
chr3 (1-52)||(53163796-53163847)
chr3 (1-72)||(25743822-25743893)
chr3 (1-52)||(40614462-40614513)
[»] chr4 (12 HSPs)
chr4 (5-92)||(10110108-10110197)
chr4 (1-94)||(16572590-16572685)
chr4 (1-81)||(55594133-55594214)
chr4 (1-45)||(6493802-6493846)
chr4 (1-81)||(292116-292198)
chr4 (1-81)||(22225848-22225930)
chr4 (1-52)||(28120009-28120060)
chr4 (1-52)||(34151153-34151204)
chr4 (3-52)||(11893506-11893555)
chr4 (15-47)||(37402870-37402902)
chr4 (84-166)||(5052061-5052145)
chr4 (84-124)||(36490497-36490537)
[»] chr7 (9 HSPs)
chr7 (1-84)||(19434492-19434577)
chr7 (1-52)||(34556993-34557044)
chr7 (1-81)||(13106417-13106499)
chr7 (1-80)||(30924093-30924174)
chr7 (3-52)||(6097369-6097418)
chr7 (3-52)||(20402422-20402471)
chr7 (1-52)||(32805571-32805622)
chr7 (1-52)||(38128324-38128375)
chr7 (3-47)||(45842878-45842922)
[»] chr6 (4 HSPs)
chr6 (1-81)||(34706722-34706804)
chr6 (1-84)||(1127814-1127899)
chr6 (10-81)||(34712237-34712310)
chr6 (1-52)||(31379469-31379520)
[»] chr1 (6 HSPs)
chr1 (1-81)||(38595855-38595937)
chr1 (1-81)||(28726008-28726090)
chr1 (1-52)||(52702248-52702299)
chr1 (1-47)||(10679547-10679593)
chr1 (1-52)||(27457053-27457104)
chr1 (1-52)||(30664270-30664321)
[»] chr8 (10 HSPs)
chr8 (3-81)||(29566702-29566782)
chr8 (1-52)||(18955726-18955777)
chr8 (1-47)||(43714291-43714337)
chr8 (1-52)||(24261398-24261449)
chr8 (1-52)||(40267954-40268005)
chr8 (3-52)||(39206218-39206267)
chr8 (1-53)||(37479599-37479651)
chr8 (1-52)||(42655379-42655430)
chr8 (1-52)||(2270558-2270608)
chr8 (1-81)||(39751574-39751656)
[»] chr2 (9 HSPs)
chr2 (1-95)||(5282356-5282452)
chr2 (1-88)||(26269980-26270067)
chr2 (1-52)||(15135823-15135874)
chr2 (1-80)||(31782668-31782749)
chr2 (1-52)||(44854443-44854493)
chr2 (1-81)||(45261905-45261991)
chr2 (3-52)||(29771449-29771498)
chr2 (5-81)||(44854312-44854388)
chr2 (1-53)||(28178433-28178485)
[»] chr5 (10 HSPs)
chr5 (1-52)||(14214152-14214203)
chr5 (1-52)||(31467752-31467803)
chr5 (1-52)||(40608638-40608689)
chr5 (1-82)||(1383377-1383458)
chr5 (1-81)||(21944963-21945045)
chr5 (1-52)||(39234863-39234914)
chr5 (3-52)||(30889535-30889584)
chr5 (1-49)||(32188093-32188141)
chr5 (1-52)||(14349592-14349643)
chr5 (3-52)||(16972209-16972258)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-84)||(509092-509176)
[»] scaffold0036 (1 HSPs)
scaffold0036 (116-179)||(88109-88173)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 52634181 - 52634318
Alignment:
Q  84 taaaataaattatttagatgagaaagtgattaattaagagaaagatataaacaatgtcattaatatcataaaaaattaatgtcttccaagtgcaatattc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52634181 taaaataaattatttagatgagaaagtgattaattaagagaaagatataaacaatgtcattaatatcatcaaaaattaatgtcttccaagtgcaatattc 52634280  T
Q  184 caaattcaatcgatttaagcatgtttaatggtgaatag 221  Q
    |||| |||||||||||||||||||||||||||||||||    
T  52634281 caaagtcaatcgatttaagcatgtttaatggtgaatag 52634318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51665818 - 51665869
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  51665818 acaattttcaatgcaataattaatatataatttctctttttattatccttaa 51665869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 53163847 - 53163796
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||| ||||    
T  53163847 acaattttcaatccagtaattaacatataatttccctatttattatccttaa 53163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 25743893 - 25743822
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtgccggaggcaccggt 72  Q
    |||||||| |||||||||||||  ||||||||||| |||||| |||| ||||| ||| || || ||||||||    
T  25743893 acaatttttaatgcaataattactatataatttccttttttagtatccttaatcggtacccgaagcaccggt 25743822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40614513 - 40614462
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||| ||  |||||||||||||||||| |||| ||||    
T  40614513 acaattttcaatgcaataactactatataatttccctttttagtatccttaa 40614462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 10110108 - 10110197
Alignment:
Q  5 ttttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttctctaaaataaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||  ||||||||||||||||||||||| ||||||||||    
T  10110108 ttttcaatgcaataattaacatataatttccctttttattatccttaatcagtgtcccggaggcaccggttagcatttccctaaaataaa 10110197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 16572590 - 16572685
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtgc--cggaggcaccggttagcatttctctaaaataaatt 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||   ||||  |||||||||||||||||||||  || |||||||||    
T  16572590 acaattttcaatgcaataattaacatataatttctctttttattatccttaaccagtgcctcggaggcaccggttagcattttccttaaataaatt 16572685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 55594214 - 55594133
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg-ccggaggcaccggttagcatttc 81  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||||   ||| || ||||||||||||||||||||    
T  55594214 acaatttttaatgcaataattaacatataattttcctttttattatccttaaccagtgccccgaggcaccggttagcatttc 55594133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6493802 - 6493846
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttatta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6493802 acaattttcaatgcaataattaacatataatttccctttttatta 6493846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 292198 - 292116
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||  ||||  || | ||||||||||||||||||    
T  292198 acaattttcaatgcaataattaacatataatttttctttttattatccttaaccggtgcccccggggcaccggttagcatttc 292116  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22225848 - 22225930
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| ||||   |||  |||| ||||||||||||||||||    
T  22225848 acaatttttaatgcaataattaacatatagtttccctttttattatccttaaccagtgtcccgggggcaccggttagcatttc 22225930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28120009 - 28120060
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  28120009 acaattttcaatgcaataattaacatataatttctctttttattatccttaa 28120060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34151204 - 34151153
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  34151204 acaattttcaatgcaataattaacatataattttcctttttattatccttaa 34151153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 11893506 - 11893555
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  11893506 aattttcaattcaataattaacatataatttccctttttattatccttaa 11893555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 37402870 - 37402902
Alignment:
Q  15 aataattaacatataatttccctttttattatc 47  Q
    |||||||||||||||||||||||||||||||||    
T  37402870 aataattaacatataatttccctttttattatc 37402902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 5052145 - 5052061
Alignment:
Q  84 taaaataaattatttagatgagaaag--tgattaattaagagaaagatataaacaatgtcattaatatcataaaaaattaatgtc 166  Q
    ||||||||||||||| ||||||| ||  ||||| |||  |||| | |||||||||||||||||||| |||  ||||| |||||||    
T  5052145 taaaataaattattttgatgagagagaatgattgattttgagagatatataaacaatgtcattaatgtcaccaaaaactaatgtc 5052061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 36490537 - 36490497
Alignment:
Q  84 taaaataaattatttagatgagaaagtgattaattaagaga 124  Q
    |||||||||||||||| |||||||| | |||||||||||||    
T  36490537 taaaataaattatttaaatgagaaaataattaattaagaga 36490497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19434577 - 19434492
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttctct 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||  |||||||||||||||| |||||||||    
T  19434577 acaattttcaatgcaataattaacatataatttccctttttattatccttaatcagtgccccggaggcaccggttaacatttctct 19434492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34556993 - 34557044
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34556993 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 34557044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13106417 - 13106499
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttatta-tctttaattggtgccgga-ggcaccggttagcatttc 81  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||   ||||| || ||||||||||||||||||    
T  13106417 acaattttcaatgcaataattaacaaataatttccctttttattattctttaaccagtgcccgagggcaccggttagcatttc 13106499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30924093 - 30924174
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcattt 80  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||   |||  |||| |||||||||||||||||    
T  30924093 acaattttcaatgcactaattaacatataatttccctttttattatccttaacccgtgccccgggggcaccggttagcattt 30924174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 6097418 - 6097369
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6097418 aattttcaatgcaataattaacatataatttccctttttattatccttaa 6097369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 20402471 - 20402422
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20402471 aattttcaatgcaataattaacatataatttccctttttattatccttaa 20402422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32805622 - 32805571
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  32805622 acaatttttaatgcaataattaacatataatttccctttttattatccttaa 32805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38128375 - 38128324
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38128375 acaattttcaatgcaataattaacatataattttcctttttattatccttaa 38128324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 45842878 - 45842922
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatc 47  Q
    |||||| |||||||||||||||||||||||| | |||||||||||    
T  45842878 aatttttaatgcaataattaacatataattttcttttttattatc 45842922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34706804 - 34706722
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  || | ||||||||||||||||||    
T  34706804 acaattttcaatgcaataattaacatataatttccctttttattatccttaaccggtgcccccggggcaccggttagcatttc 34706722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1127899 - 1127814
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg---ccggaggcaccggttagcatttctct 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||   ||||| |||| |||||||||||||||    
T  1127899 acaattttcaatgcaataattaacatataatttccctttttattatccttaaccggtgcccccgga-gcactggttagcatttctct 1127814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 34712237 - 34712310
Alignment:
Q  10 aatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||  |||||||||||||||||||||||    
T  34712237 aatgcaataattaacatataatttccctttttattatccttaaccagtgccccggaggcaccggttagcatttc 34712310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31379469 - 31379520
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  31379469 acaattttaaatgcaataattaatatataatttccctttttattatccttaa 31379520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38595855 - 38595937
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||  |||| ||||||||||||||||||    
T  38595855 acaattttcaatgcaataattaacatataatttccctttttattatccttaaccagtgccccgggggcaccggttagcatttc 38595937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28726008 - 28726090
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||   |||  |||| ||||||||||||||||||    
T  28726008 acaattttcaatgcaataattaacatataatttccttttttattatccttaaccagtgccccgggggcaccggttagcatttc 28726090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 52702248 - 52702299
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52702248 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 52702299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10679593 - 10679547
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10679593 acaattttcaatgcaataattaacatataatttccctttttattatc 10679547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27457053 - 27457104
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  27457053 acaattttcaatgcactaattaacatataatttcactttttattatctttaa 27457104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30664270 - 30664321
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  30664270 acaattttcaatgcaataattaacatataattttcttttttattatccttaa 30664321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29566782 - 29566702
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||   |||  |||| ||||||||||||||||||    
T  29566782 aattttcaatgcaataattaacatataatttccctttttattatccttaacccgtgccccgggggcaccggttagcatttc 29566702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18955777 - 18955726
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18955777 acaattttcaatgcaataattaacatataatttccctttttattatcattaa 18955726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43714291 - 43714337
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatc 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43714291 acaattttcaatgcaataattaacatataatttccctttttattatc 43714337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24261449 - 24261398
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  24261449 acaattttcaatgcaataattaacatataatttctctttttattatccttaa 24261398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40268005 - 40267954
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  40268005 acaattttcaatgcaataattaacctataatttccctttttattatccttaa 40267954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 39206267 - 39206218
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  39206267 aattttcaatacaataattaacatataatttccctttttattatccttaa 39206218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37479651 - 37479599
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaat 53  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  37479651 acaattttcaaggcaataattaacatataatttccttttttattatccttaat 37479599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42655379 - 42655430
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  42655379 acaattttcaatgcaataattaacatataatttaccttttcattatccttaa 42655430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2270608 - 2270558
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  2270608 acaattttcaatacaataattaacatataa-ttccctttttattatttttaa 2270558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39751574 - 39751656
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    |||||||| |||||||||| ||| ||||||||| ||||||||||||| ||||   |||  |||| ||||||||||||||||||    
T  39751574 acaatttttaatgcaataaataatatataattttcctttttattatccttaaccagtgccccgggggcaccggttagcatttc 39751656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5282356 - 5282452
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttctctaaaataaatta 95  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||  |||  ||||||||| || |||| ||||| |||||| ||||||    
T  5282356 acaattttcaatgcaataattaacatataatttccccttttattatccttaatcagtgtcccggaggcatcgattagtatttccctaaaaaaaatta 5282452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26270067 - 26269980
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg-ccggaggcaccggttagcatttctctaaaa 88  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  |||   ||| |||| |||||||||||||||||||||||||    
T  26270067 acaattttcaatgcaataattaacatataatttctctttttattatc-ctaaccagtgcccgggggcaccggttagcatttctctaaaa 26269980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15135823 - 15135874
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15135823 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 15135874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31782668 - 31782749
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcattt 80  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| |||||  |||  |||| | |||||||||||||||    
T  31782668 acaattttcaatgcaataattaatatataatttctctttttattatccttaatccgtgccccggggacaccggttagcattt 31782749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44854443 - 44854493
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44854443 acaattttcaatgcaataattaacatataattt-cctttttattatccttaa 44854493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 45261991 - 45261905
Alignment:
Q  1 acaattttcaatgcaataattaacata---taatttccctttttattatctttaattggtgcc---ggaggcaccggttagcatttc 81  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| ||||   |||||   || ||||||||||||||||||    
T  45261991 acaattttcaatgcaataattaacatataataatttccctttttattatccttaaccagtgccctggggggcaccggttagcatttc 45261905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29771498 - 29771449
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  29771498 aattttcaatgtaataattaacatataatttccttttttattatccttaa 29771449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 44854388 - 44854312
Alignment:
Q  5 ttttcaatgcaataattaacatataatttccctttttattatctttaa-ttggtgccggaggcaccggttagcatttc 81  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||   ||  |||| ||||||||||||||||||    
T  44854388 ttttcaatgcaataattaatatataattt-cctttttattatccttaaccaggacccgggggcaccggttagcatttc 44854312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28178485 - 28178433
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaat 53  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||| |||||    
T  28178485 acaattttcaatgtaataattaatatataatttttctttttattatccttaat 28178433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14214152 - 14214203
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14214152 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 14214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31467803 - 31467752
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31467803 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 31467752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40608638 - 40608689
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40608638 acaattttcaatgcaataattaacatataatttccctttttattatccttaa 40608689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1383377 - 1383458
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtgccggaggcaccggttagcatttct 82  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||   || || | | |||||||||||||||||    
T  1383377 acaattttcaatgcaataattaacatataatttcccttcttattatccttaaccagtacccgggacaccggttagcatttct 1383458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21944963 - 21945045
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggtg--ccggaggcaccggttagcatttc 81  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||| ||||   |||  |||||||||||||||||||||||    
T  21944963 acaatttttaatgcaataattaatatataattttcctttttattatccttaaccagtgccccggaggcaccggttagcatttc 21945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39234914 - 39234863
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  39234914 acaattgtcaatgcaataattaacatataatttccctttttattatccttaa 39234863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 30889535 - 30889584
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  30889535 aattttcaattcaataattaacatataatttccctttttattatccttaa 30889584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32188093 - 32188141
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctt 49  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  32188093 acaattttcaatgcaataattaacatataatttttctttttattatctt 32188141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14349643 - 14349592
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  14349643 acaattttcaatgcaataattaacatataatttatctttttattatccttaa 14349592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 16972258 - 16972209
Alignment:
Q  3 aattttcaatgcaataattaacatataatttccctttttattatctttaa 52  Q
    |||||| ||||||||||||||||||||||||  |||||||||||| ||||    
T  16972258 aatttttaatgcaataattaacatataatttttctttttattatccttaa 16972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 509092 - 509176
Alignment:
Q  1 acaattttcaatgcaataattaacatataatttccctttttattatctttaattggt-gccggaggcaccggttagcatttctct 84  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||| |||| |  |  |||| |||||||||||||||||||||    
T  509092 acaattttcaattcaataattaacatataatttccatttttattatccttaactaatatccgggggcaccggttagcatttctct 509176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 88173 - 88109
Alignment:
Q  116 attaagagaaagatataaacaatgtcattaatatcataaaaaa-ttaatgtcttccaagtgcaat 179  Q
    ||||||||| ||||| |||||||||||| ||| ||| |||||| ||| |||| ||||||||||||    
T  88173 attaagagagagatagaaacaatgtcatcaatgtcacaaaaaagttagtgtcatccaagtgcaat 88109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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