View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_55 (Length: 233)
Name: NF17941_low_55
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_55 |
 | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0640 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 2326 - 2133
Alignment:
| Q |
18 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtgttttttctgcaagctgaatggaaggaggtccgaaatttggctcgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2326 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtgttttttctgcaagctgaatggaaggaggtccgaaatttggctcgaa |
2227 |
T |
|
| Q |
118 |
atgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagttttttcgtgggcag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2226 |
atgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacaattccaatgcagtgtccgtgccagttttttcgtgggcag |
2133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 8970 - 8788
Alignment:
| Q |
23 |
tggatttggagccagaaaatattaaat-gcaagtcagattctgaatt--gtgttttttctgcaagctgaatggaaggaggtccgaaatttggctcgaaat |
119 |
Q |
| |
|
|||||||| |||||||||| | | ||| ||| ||||||||||||||| || ||||| |||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
8970 |
tggatttgaagccagaaaaaaatcaattgcatgtcagattctgaatttagtatttttgctgcaagctgaatgtaaggaggtttgaaacttggctcgaaat |
8871 |
T |
|
| Q |
120 |
gacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagtttttt |
202 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8870 |
gacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
8788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 22814 - 22620
Alignment:
| Q |
18 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtgtttttt-ctgcaagctgaatggaaggaggtccgaaatttggctcga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22814 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtttttttttctgcaagctgaatggaaggaggtccgaaatttggctcga |
22715 |
T |
|
| Q |
117 |
aatgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagttttttcgtgggcag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714 |
aatgacatagttagaagcagcagaagtagcaccggacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagttttttcgtgggcag |
22620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 41408641 - 41408835
Alignment:
| Q |
18 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtgtttt-ttctgcaagctgaatggaaggaggtccgaaatttggctcga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41408641 |
atgaatggatttggagccagaaaatattaaatgcaagtcagattctgaattgtttttttttctgcaagctgaatggaaggaggtccgaaatttggctcga |
41408740 |
T |
|
| Q |
117 |
aatgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagttttttcgtgggcag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41408741 |
aatgacatagttagaagcagcagaagtagcaccggacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagttttttcgtgggcag |
41408835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 41193563 - 41193721
Alignment:
| Q |
46 |
aaatgcaagtcagattctgaatt--gtgttttttctgcaagctgaatggaaggaggtccgaaatttggctcgaaatgacatagttagaagcagcagaagt |
143 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
41193563 |
aaatgcatgtcagattctgaatttagtatttttgctgcaagctgaatggaaggaggtttgaaacttggctcgaaatgacatagttaaaagtctcagaagt |
41193662 |
T |
|
| Q |
144 |
agcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagtttttt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41193663 |
agcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
41193721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 1042462 - 1042649
Alignment:
| Q |
18 |
atgaatggatttggagccagaaaatattaaat-gcaagtcagattctgaatt--gtgttttttctgcaagctgaatggaaggaggtccgaaatttggctc |
114 |
Q |
| |
|
|||| |||||||| |||||||||| | | ||| ||| ||||||||||||||| || ||||| |||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
1042462 |
atgagtggatttgaagccagaaaaaaatcaattgcatgtcagattctgaatttagtatttttgctgcaagctgaatgtaaggaggtttgaaacttggctc |
1042561 |
T |
|
| Q |
115 |
gaaatgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagtttttt |
202 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1042562 |
gaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
1042649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 33324053 - 33324240
Alignment:
| Q |
18 |
atgaatggatttggagccagaaaatattaaat-gcaagtcagattctgaatt--gtgttttttctgcaagctgaatggaaggaggtccgaaatttggctc |
114 |
Q |
| |
|
|||| |||||||| |||||||||| | | ||| ||| ||||||||||||||| || ||||| |||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
33324053 |
atgagtggatttgaagccagaaaaaaatcaattgcatgtcagattctgaatttagtatttttgctgcaagctgaatgtaaggaggtttgaaacttggctc |
33324152 |
T |
|
| Q |
115 |
gaaatgacatagttagaagcagcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtccgtgccagtttttt |
202 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33324153 |
gaaatgacatagttaaaagtctcagaagtagcagcggacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttt |
33324240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University