View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_6 (Length: 537)
Name: NF17941_low_6
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Original strand, 43880883 - 43881388
Alignment:
| Q |
16 |
atgaatgaaagaagtagccgttctcacaggttaaatcannnnnnnctttccttgaaatgaaagctttttattatgatgacatgtataaactttacgtgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43880883 |
atgaatgaaagaagtagccgttctcacaggttaaatcatttttttctttccctgaaatgaaagctttttattatgatgacatgtataaactttacgtgca |
43880982 |
T |
|
| Q |
116 |
cagtgtggtctcaattcatgttcgcggaaaggacttcaagtctggttctactatgcatggtaatcttcatttggtagatttggccggaagtgaaagagtc |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43880983 |
cagtgtggtctcaattcatgttcgtggaaaggatttcaagtctggttctactatgcatggtaatcttcatttggtagatttggccggaagtgaaagagta |
43881082 |
T |
|
| Q |
216 |
gatcgatctgatgtaaccggggatagacttaaggaagcacaacatataaacaaatcactttctgccctcggagatgtaatctttgccctttctcaaaaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881083 |
gatcgatctgatgtaaccggggatagacttaaggaagcacaacatataaacaaatcactttctgccctcggagatgtaatctttgccctttctcaaaaga |
43881182 |
T |
|
| Q |
316 |
gtccccatgtaccatatagaaacagcaagcttactcaacttctgcaaacgtctcttggtaaatcaatgttcatctgcttaacttttggtttagaatctct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43881183 |
gtccccatgtaccatatagaaacagcaagcttactcaacttctgcaaacgtctcttggtaaatcaatgttcatctgcttaactttcggtttagaatctct |
43881282 |
T |
|
| Q |
416 |
ttcaagcttctactagattttgatttgaatattgtctttgattttactgcacaggcggtcaagcaaagactctcatgtttgtccagattaactcggacgt |
515 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881283 |
ttcaagcttctactagattttgattggaatattgtctttgattttactgcacaggcggtcaagcaaagactctcatgtttgtccagattaactcggacgt |
43881382 |
T |
|
| Q |
516 |
cagttc |
521 |
Q |
| |
|
|||||| |
|
|
| T |
43881383 |
cagttc |
43881388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 201 - 358
Target Start/End: Complemental strand, 40982513 - 40982356
Alignment:
| Q |
201 |
ggaagtgaaagagtcgatcgatctgatgtaaccggggatagacttaaggaagcacaacatataaacaaatcactttctgccctcggagatgtaatctttg |
300 |
Q |
| |
|
|||||||||||||| ||||| ||||| | ||||| ||||| |||||||| || || ||||||||||||||||| ||||| || |||||||| || |||| |
|
|
| T |
40982513 |
ggaagtgaaagagtggatcgctctgaagctaccggagataggcttaaggaggctcagcatataaacaaatcactatctgcacttggagatgttatatttg |
40982414 |
T |
|
| Q |
301 |
ccctttctcaaaagagtccccatgtaccatatagaaacagcaagcttactcaacttct |
358 |
Q |
| |
|
| || |||||||||| || ||||| ||||||||||| ||||| | ||||||||||| |
|
|
| T |
40982413 |
ctctggctcaaaagagcccacatgtgccatatagaaatagcaaattgactcaacttct |
40982356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 174 - 377
Target Start/End: Complemental strand, 31646151 - 31645948
Alignment:
| Q |
174 |
ggtaatcttcatttggtagatttggccggaagtgaaagagtcgatcgatctgatgtaaccggggatagacttaaggaagcacaacatataaacaaatcac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| ||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
31646151 |
ggtaatcttcatttggtagatttggccggaagtgaaaggatagatcgttctgaagtaaccggagattgactaaaggaagcacaacatattaacaaatcat |
31646052 |
T |
|
| Q |
274 |
tttctgccctcggagatgtaatctttgccctttctcaaaagagtccccatgtaccatatagaaacagcaagcttactcaacttctgcaaacgtctcttgg |
373 |
Q |
| |
|
| || || || |||||| | || || |||||| ||||||||||| | ||| |||||||||||||||||||||| || ||| || ||||||| |||||||| |
|
|
| T |
31646051 |
tgtcagctcttggagatttcattttcgcccttgctcaaaagagtgctcatataccatatagaaacagcaagctcacacaaattttgcaaacctctcttgg |
31645952 |
T |
|
| Q |
374 |
taaa |
377 |
Q |
| |
|
|||| |
|
|
| T |
31645951 |
taaa |
31645948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 31380664 - 31380756
Alignment:
| Q |
285 |
ggagatgtaatctttgccctttctcaaaagagtccccatgtaccatatagaaacagcaagcttactcaacttctgcaaacgtctcttggtaaa |
377 |
Q |
| |
|
|||||||| || || |||||| ||||||||||| ||| |||||||| ||||||||||||| || ||| || ||||||| ||||||||||| |
|
|
| T |
31380664 |
ggagatgttattttcgcccttgctcaaaagagtgttcatataccatatcgaaacagcaagctcacacaaattttgcaaacccctcttggtaaa |
31380756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University