View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_7 (Length: 527)
Name: NF17941_low_7
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 74 - 519
Target Start/End: Complemental strand, 50243636 - 50243190
Alignment:
| Q |
74 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50243636 |
gcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaagctccac |
50243537 |
T |
|
| Q |
174 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatct |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50243536 |
caactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatct |
50243437 |
T |
|
| Q |
274 |
cagaaagnnnnnnnngttaactttttcattaaacaaagacatatttc---aaaacnnnnnnnnnngaaattcacatagtatttcgttgtctgtcacaaca |
370 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50243436 |
cagaaagaaaaaaaagttaactttttcattaaacaaagac--atttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgtcacaaca |
50243339 |
T |
|
| Q |
371 |
ataataataagtaacaactatatcgccccgacacttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgac |
470 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50243338 |
ataataataagtaacaactatatcggcccgacacttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgac |
50243239 |
T |
|
| Q |
471 |
atagtcattttatattggtagttgaatagaatagattcctacctatgct |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50243238 |
atagtcattttatattggtagttgaatagaatagattcctacctatgct |
50243190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
400 |
gacacttgagattgaaagcatgttcaatgtctaacat |
436 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University