View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17941_low_8 (Length: 512)

Name: NF17941_low_8
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17941_low_8
NF17941_low_8
[»] chr4 (6 HSPs)
chr4 (21-499)||(42685792-42686270)
chr4 (345-404)||(21185728-21185787)
chr4 (345-404)||(27119326-27119385)
chr4 (38-100)||(27119424-27119485)
chr4 (38-100)||(21185826-21185887)
chr4 (217-256)||(27119384-27119423)


Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Complemental strand, 42686270 - 42685792
Alignment:
Q  21 gtacagaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42686270 gtacagaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaa 42686171  T
Q  121 aaaccattatcaaagtcatcctgattaattaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggt 220  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42686170 aaaccattatcaaagtcatccttattaatgaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggt 42686071  T
Q  221 acttggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataact 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42686070 acttggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataact 42685971  T
Q  321 caaactcctgccttaaacacttaacttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggnnnn 420  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  42685970 caaactcctgccttaaacacttaccttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggaaaa 42685871  T
Q  421 nnnnncaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaattat 499  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42685870 aaaaacaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaattat 42685792  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 21185787 - 21185728
Alignment:
Q  345 cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc 404  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  21185787 cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc 21185728  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 27119385 - 27119326
Alignment:
Q  345 cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc 404  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  27119385 cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc 27119326  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 27119485 - 27119424
Alignment:
Q  38 tgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa 100  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119485 tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa 27119424  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 21185887 - 21185826
Alignment:
Q  38 tgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa 100  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21185887 tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacagacataa 21185826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 27119423 - 27119384
Alignment:
Q  217 gggtacttggtctccaaaggattcccggtcctagatttct 256  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  27119423 gggtacttagtctccaaaggattcccagtcctagatttct 27119384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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