View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_9 (Length: 472)
Name: NF17941_low_9
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 752336 - 752628
Alignment:
| Q |
20 |
aattggactcatcatgttgatggtaatgttacatatcatcatcccaaaattgatatgaagaaggatgaagctgaaaatgataaaattctgccaccatatt |
119 |
Q |
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| T |
752336 |
aattggactcatcatgttgatggtaatgttacatatcatcatcccaaaattgatatgaagaaggatgaagctgaaaatgataaaattctgccaccatatt |
752435 |
T |
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| Q |
120 |
attacaatagaaatggaatgatgatgcaatcatatcccattgctatgtctactcttccttctcaaaatctttcaaacctatcccatgaacatctaaataa |
219 |
Q |
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| T |
752436 |
attacaatagaaatggaatgataatgcaatcatatcctattgctatgtctactcttccttctcaaaatctttcaaacctatcccatgaacatctaaataa |
752535 |
T |
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| Q |
220 |
tggatcctatgataaagatgttcttcacactcaaatgttcaactacatggatggaaggaagtagttggttatgctttagacattcatgctaac |
312 |
Q |
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| T |
752536 |
tggatcctatgataaagatgttcttcacactcaaatgttcaactacatggatggaaggaagtagttggttatgctttagacattcatgctaac |
752628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 76 - 302
Target Start/End: Original strand, 746393 - 746619
Alignment:
| Q |
76 |
gaagaaggatgaagctgaaaatgataaaattctgccaccatattattacaatagaaatggaatgatgatgcaatcatatcccattgctatgtctactctt |
175 |
Q |
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| T |
746393 |
gaagaaggatgaagttaaaaatgacaaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcct |
746492 |
T |
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| Q |
176 |
ccttctcaaaatctttcaaacctatcccatgaacatctaaataatggatcctatgataaagatgttcttcacactcaaatgttcaactacatggatggaa |
275 |
Q |
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| T |
746493 |
ccttttcagaatcttgcaaacctatcccatgaatatctactttatggatcctatgatatagatagtattcaagctcaactgttcaactccaagaatggaa |
746592 |
T |
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| Q |
276 |
ggaagtagttggttatgctttagacat |
302 |
Q |
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| T |
746593 |
cgaagtagcatgtaatgctttagacat |
746619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 284
Target Start/End: Complemental strand, 7327041 - 7326836
Alignment:
| Q |
79 |
gaaggatgaagctgaaaatgataaaattctgccaccatattattacaatagaaatggaatgatgatgcaatcatatcccattgctatgtctactcttcct |
178 |
Q |
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|||||||| ||||||||||||| ||| | ||||||| ||||||||| |||||| | || ||||||||||||||| |||||||| | |||||||| |
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| T |
7327041 |
gaaggatgtagctgaaaatgatgaaaacttatcaccatactattacaatggaaatgcatcgacgatgcaatcatatccttttgctatgcattctcttcct |
7326942 |
T |
|
| Q |
179 |
tctcaaaatctttcaaacctatcccatgaacatctaaataatggatcctatgataaagatgttcttcacactcaaatgttcaactacatggatggaagga |
278 |
Q |
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| T |
7326941 |
ttccagaatctttcatacctaccacatggatttcaacttaatggattcaatgatataaatatgcttcaagctcataagttcaactacatggatggaagga |
7326842 |
T |
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| Q |
279 |
agtagt |
284 |
Q |
| |
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|||||| |
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| T |
7326841 |
agtagt |
7326836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 752734 - 752771
Alignment:
| Q |
418 |
aagtggaacaatttgcttggttaattcaatgttatatt |
455 |
Q |
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| T |
752734 |
aagtggaacaatttgcttggttaattcaatgttatatt |
752771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 51792081 - 51792002
Alignment:
| Q |
120 |
attacaatagaaatggaatgatgatgcaatcatatcccattgctatgtctactcttccttctcaaaatctttcaaaccta |
199 |
Q |
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|||||||| |||||| ||||| |||||||||||||| ||| ||||| |||||||||| ||| ||||| ||||||||| |
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| T |
51792081 |
attacaatggaaatgcaatgacaatgcaatcatatcctattactatgcacactcttccttttcagaatctctcaaaccta |
51792002 |
T |
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