View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_high_12 (Length: 364)
Name: NF17942_high_12
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 32640672 - 32640338
Alignment:
| Q |
19 |
gaatgttcttatatgtttggcagatattagacaaactaaccaaaaatgaggtacactaaaatagcttttaacaaatgtgtaatcacaattctttggatta |
118 |
Q |
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| T |
32640672 |
gaatgttcttatatgtttggcagatattagacaaactaaccaaaaatgaggtacactaaaatagcttttaacaaatgtgtaatcacaattctttggatta |
32640573 |
T |
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| Q |
119 |
ctaatttgttggtagaaggaacaaccaaagacaaactaatcgatttcgggcacacttgtgatttttaactaacgataatacagtgagaagtgaatgtttc |
218 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640572 |
ctaatttgttggaacaaggaacaaccaaagacaaactaatcgatttcgggcacacttgtgatttttaactaacgataatacagtgagaagtgaatgtttc |
32640473 |
T |
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| Q |
219 |
ttctatgtttaactggttttagacaaactaaataaaaatgagctatactaaccagcttttaaaaaagatgtaatcataattcttttgattaccaatttgt |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640472 |
ttctatgtttaactggttttagacaaactaactaaaaatgagctatactaaccagcttttaaaaaagatgtaatcataattcttttgattaccaatttgt |
32640373 |
T |
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| Q |
319 |
cacataatcagtatcatacacttttatgttttcat |
353 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32640372 |
cacataatcagtatcatacacttttatgttttcat |
32640338 |
T |
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