View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_high_13 (Length: 354)
Name: NF17942_high_13
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 26722621 - 26722954
Alignment:
| Q |
5 |
gaggagcacagacgcatgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtccnnnnnnnnnn---ccttcctgcaattg |
101 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26722621 |
gaggaacacaaacgcatgatgttgcatgttaagaaaataaagtcaagtgcttaaattggtatagtttctgtcctttttttttttttccttcctgcaattg |
26722720 |
T |
|
| Q |
102 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26722721 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggta |
26722820 |
T |
|
| Q |
202 |
agttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatgattttgtcaat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722821 |
agttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatatgattttgtcaat |
26722920 |
T |
|
| Q |
302 |
caatcttggacaagaaagctactgcagtagtctt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26722921 |
caatcttggacaagaaagctactgcagtagtctt |
26722954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 291
Target Start/End: Complemental strand, 26837902 - 26837731
Alignment:
| Q |
114 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaagttaatttatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || |
|
|
| T |
26837902 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcata |
26837809 |
T |
|
| Q |
214 |
aacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| |
|
|
| T |
26837808 |
aacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatga |
26837731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 7850924 - 7850981
Alignment:
| Q |
20 |
atgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtcc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7850924 |
atgatgttgcatgttaagaaaataaagttaagaacttaaaatggtatagtttctgtcc |
7850981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University