View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_high_16 (Length: 327)
Name: NF17942_high_16
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 319
Target Start/End: Complemental strand, 33469092 - 33468806
Alignment:
| Q |
35 |
aacaagacactgtttaaggttgttgttactttgatttaagaatgtttaaatctgctttgcattgttgttgaaacattagaacaaaaaagaattaacatgn |
134 |
Q |
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| T |
33469092 |
aacaagacactgtttaaggttgttgttactttgatttaagaatgtctaaatctgctttgcattgttgttgaaacattagaacaaaaaagaattaacatgt |
33468993 |
T |
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| Q |
135 |
nnnnnnnnnnnnn--gcagagttactaatatgagcttgatttgaaaatggggttggtctaaagggttgtcaagagctttctgtaaggaaaagaaagagtc |
232 |
Q |
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| T |
33468992 |
tttttttttttttttgcagagttactaatatgagcttgatttgaaaatggggttggtctaaagggttgtcaagagctttctgtaaggaaaagaaagagtc |
33468893 |
T |
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| Q |
233 |
ttgttttacttttcaattctatattgaaaaattggtatttcccccatctcatggggggtttctgtaatttttgaaaattattcatct |
319 |
Q |
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| T |
33468892 |
ttgttttacttttcaattctatattgaaaaattggtatttcccccatctcatggggggtttctgtaatttttgaaaattattcatct |
33468806 |
T |
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