View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_high_23 (Length: 260)
Name: NF17942_high_23
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_23 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 9526212 - 9525969
Alignment:
| Q |
17 |
aaaacctgtgcaggaacatgctcataatatataagagtgaaaccactgtcacaactaatgttggctacgccatcaacacaaactatagagtttcaacttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9526212 |
aaaacctgtgcaggaacatgctcataatatataagagtgaaaccactgtcacaactaatgttggctacgccatcaacacaaactatagagtttcaacttt |
9526113 |
T |
|
| Q |
117 |
aaccatatgcaaccaaactagcatgcatagccacaggataatcgtgcaacacacaaagagagaaaacataaaatcttctatatctcaaagagacaagcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9526112 |
aaccatatgcaaccaaactagcatgcatagccacaggataatcgtgcaacacacaaagagagaaaacataaaatcttctatatctcaaagagacaagcta |
9526013 |
T |
|
| Q |
217 |
tagatttttcaaacttaaaacatgtcaatcataaaacaattaaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9526012 |
tagatttttcaaacttaaaacatgtcaatagtaaaacaattaaa |
9525969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 36874405 - 36874285
Alignment:
| Q |
123 |
atgcaaccaaactagcatgcatagccacaggataatcgtgcaacacacaaagagagaaaacataaaatcttctatatctcaaagagacaagctatagatt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| | |||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
36874405 |
atgcaaccaaactagcatgcatagccacaagacaatcgcgaaacacataaagagagaaaccataaaatcttttatatctcatggagacaagctatagact |
36874306 |
T |
|
| Q |
223 |
tttcaaacttaaaacatgtca |
243 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36874305 |
tttcaaacttaaaacatgtca |
36874285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 36871877 - 36872016
Alignment:
| Q |
123 |
atgcaaccaaactagcatgcatagccacaggataatcgtgcaacacacaaagagagaaaacataaaatcttctatatctcaaagagacaagctata--ga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||| ||||||||||| ||||||||| |||| |||||||| | |
|
|
| T |
36871877 |
atgcaaccaaactagcatgcatagccacagcataatcacgaaacacataaagagagaaaccataaaatcttatatatctcatggagataagctataataa |
36871976 |
T |
|
| Q |
221 |
tttttcaaacttaaaacatgtcaatcataaaacaattaaa |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36871977 |
cttttcaaacttaaaacatgtcacgagtaaaacaattaaa |
36872016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 23043095 - 23043150
Alignment:
| Q |
153 |
gataatcgtgcaacacacaaagagagaaaacataaaatcttctatatctcaaagaga |
209 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| |||||||||||| ||||| |
|
|
| T |
23043095 |
gataatcgtgcaacacttaaagaga-aaaacacaaaatattctatatctcatagaga |
23043150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University