View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17942_high_25 (Length: 254)

Name: NF17942_high_25
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17942_high_25
NF17942_high_25
[»] chr2 (5 HSPs)
chr2 (19-158)||(17364649-17364788)
chr2 (20-137)||(7505031-7505151)
chr2 (48-137)||(26973390-26973482)
chr2 (20-135)||(26968864-26968982)
chr2 (195-250)||(17364593-17364648)
[»] chr4 (2 HSPs)
chr4 (20-186)||(22462387-22462555)
chr4 (20-137)||(14059005-14059125)
[»] chr8 (2 HSPs)
chr8 (20-137)||(38643689-38643809)
chr8 (20-137)||(8263442-8263558)
[»] chr3 (3 HSPs)
chr3 (46-187)||(42872038-42872182)
chr3 (20-137)||(53726767-53726883)
chr3 (20-73)||(53731312-53731365)
[»] chr1 (3 HSPs)
chr1 (20-137)||(19033707-19033827)
chr1 (20-142)||(38968507-38968631)
chr1 (123-186)||(38968639-38968702)
[»] chr7 (1 HSPs)
chr7 (20-137)||(47204887-47205007)
[»] chr5 (4 HSPs)
chr5 (24-175)||(3640902-3641052)
chr5 (20-118)||(16085169-16085270)
chr5 (58-137)||(16088073-16088155)
chr5 (49-142)||(3627822-3627914)
[»] chr6 (1 HSPs)
chr6 (20-137)||(19229598-19229714)
[»] scaffold0427 (1 HSPs)
scaffold0427 (20-142)||(5755-5879)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 17364788 - 17364649
Alignment:
Q  19 aaggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgtgcagaatctggtt 118  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17364788 aaggcggataaatttcaagtatggtcctcgtgatgcttcagtttaataccaacgtttccaattttgcaagtttactttctagttcgtgcagaatctggtt 17364689  T
Q  119 cgtggttatttgaagttgcagttgatgtttgcgttcaaat 158  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  17364688 cgttgttatttgaagttgcagttgatgtttacgttcaaat 17364649  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 7505151 - 7505031
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||||||| |  ||| ||||||| |||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||    
T  7505151 aggcggataaatttcaaggacagtcttcgtgacacctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctgg 7505052  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  7505051 ttcggtgttatttgaagttgc 7505031  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 26973482 - 26973390
Alignment:
Q  48 gtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctggttcgtggttatttgaagttgc 137  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||||||  |||||||||||||||    
T  26973482 gtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgc 26973390  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 26968982 - 26968864
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||   |||||||||||| ||||||||||||||| |   |||||||| |||    
T  26968982 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacacattcaattttgcaggtttactttctagtttgttttgcagaatatgg 26968883  T
Q  117 ttcgtggttatttgaagtt 135  Q
    ||||  |||||||||||||    
T  26968882 ttcggtgttatttgaagtt 26968864  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 17364648 - 17364593
Alignment:
Q  195 tttctatcaaatgaaaaagagaaacgctaacaagtctcttctcattcatctcactc 250  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  17364648 tttccatcaaatgaaaaagagaaacgctaacaagcctcttctcattcctttcactc 17364593  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 22462387 - 22462555
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||  |  ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||   || |||||||||    
T  22462387 aggcggataaattccaaagacagtcctcgtgacgcctcatgttaatactaacgtattcaattttacaagtttactttctggttcgtcttgtagaatctgg 22462486  T
Q  117 ttcgtggttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcatcaggtacaaca 186  Q
    ||| | |||||||||||||||  | | ||||||| ||||||||||||||||| |||||| ||||||||||    
T  22462487 ttcattgttatttgaagttgcgatcgttgtttgcattcaaatcaatattaccaacgcat-aggtacaaca 22462555  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 14059005 - 14059125
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| ||||  |||||||||||| ||||||||| ||||| |   ||||||||||||    
T  14059005 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttgtagtttgttttgcagaatctgg 14059104  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||| |||||||||||||||    
T  14059105 ttcgttgttatttgaagttgc 14059125  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 38643809 - 38643689
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||    
T  38643809 aggcggataaatttcaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctgg 38643710  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  38643709 ttcggtgttatttgaagttgc 38643689  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 8263442 - 8263558
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||     ||||| || ||||||||||||||| |   ||||||||||||    
T  8263442 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----gattttacatgtttactttctagtttgttttgcagaatctgg 8263537  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  8263538 ttcggtgttatttgaagttgc 8263558  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 42872038 - 42872182
Alignment:
Q  46 tcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagt---tcgtgcagaatctggttcgtggttatttgaagttgcagttg 142  Q
    |||||||||||||||||||||| ||||| ||||||||| || |||||||||||| |   ||  | ||||||||||| || ||| | || ||||||| |||    
T  42872038 tcgtgacgcctcaggttaatactaacgtattcaattttacaggtttactttctaatttatctcgtagaatctggtttgttgttctctgcagttgcaattg 42872137  T
Q  143 atgtttgcgttcaaatcaatattaccgacgcatcaggtacaacaa 187  Q
     ||||||||||||||||||||||| | ||  ||||||||||||||    
T  42872138 ttgtttgcgttcaaatcaatattatcaacatatcaggtacaacaa 42872182  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 53726883 - 53726767
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||    |||||| || ||||| ||||||||| |   ||||||||| ||    
T  53726883 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----aattttacaggtttaatttctagtttgttttgcagaatcagg 53726788  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    |||   |||||||||||||||    
T  53726787 ttccgtgttatttgaagttgc 53726767  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 53731365 - 53731312
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgt 73  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||    
T  53731365 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt 53731312  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 19033827 - 19033707
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||| |   ||||||||||||    
T  19033827 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactgtctagtttgttttgcagaatctgg 19033728  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||| |||| | ||||||||    
T  19033727 ttcgttgttactcgaagttgc 19033707  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 38968507 - 38968631
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagt---tcgtgcagaatctgg 116  Q
    |||||||||||||| ||| |  ||| |||||||||||||||||||||| ||| | ||||| |||||| ||||||||||||||   || ||||||||| ||    
T  38968507 aggcggataaattttaaggacagtcttcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatccgg 38968605  T
Q  117 ttcgtggttatttgaagttgcagttg 142  Q
    ||||| ||||||||||||||| ||||    
T  38968606 ttcgttgttatttgaagttgcggttg 38968631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 38968639 - 38968702
Alignment:
Q  123 gttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcatcaggtacaaca 186  Q
    ||||||||||||||| |||| ||||  |||||||||||||||||| | ||||||||||||||||    
T  38968639 gttatttgaagttgctgttgctgttatcgttcaaatcaatattactgtcgcatcaggtacaaca 38968702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 47204887 - 47205007
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||  ||| |  ||| |||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||| |   |||||||||||     
T  47204887 aggcggataaattctaaggacagtcttcgtgacgcctcaggttaatactaacgtattcaattttgcagatttactttctagtttgttttgcagaatctga 47204986  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  47204987 ttcgatgttatttgaagttgc 47205007  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 3640902 - 3641052
Alignment:
Q  24 ggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttc--gtgcagaatctggttcgt 121  Q
    ||||||||| |||| |  |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||  ||||   | |  ||||| ||||||    
T  3640902 ggataaattccaaggacagtcctcgtgacgcctcaggttaatactaacgtgttcaatcttgcaggtttactttccggttcatcttccaaatctagttcgt 3641001  T
Q  122 ggttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcat 175  Q
     ||| ||||||||||| |||| | |   ||| ||||||||||||||||||||||    
T  3641002 tgttgtttgaagttgcggttgctat---cgtacaaatcaatattaccgacgcat 3641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 16085270 - 16085169
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| ||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||||| |   ||||||||||||    
T  16085270 aggcggataaattccaaggacagtcttcgtgacgcctgaggttaatactaacgtgttcaatgttgcaggtttactttctagtttgttttgcagaatctgg 16085171  T
Q  117 tt 118  Q
    ||    
T  16085170 tt 16085169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 16088155 - 16088073
Alignment:
Q  58 aggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctggttcgtggttatttgaagttgc 137  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||| |   |||||||||||||| || |||| | ||||||||    
T  16088155 aggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgc 16088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 3627914 - 3627822
Alignment:
Q  49 tgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgt---gcagaatctggttcgtggttatttgaagttgcagttg 142  Q
    |||||||||| |||||||| |||||     ||||| || ||||||||||||||| ||   ||||||| |||||||| ||||||||||||||| ||||    
T  3627914 tgacgcctcaagttaatactaacgtg----attttacaggtttactttctagtttgttttgcagaatttggttcgttgttatttgaagttgcggttg 3627822  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 19229714 - 19229598
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||     ||||| || ||||||||||||||| |   ||||||||||||    
T  19229714 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----gattttacaggtttactttctagtttgttttgcagaatctgg 19229619  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  19229618 ttcggtgttatttgaagttgc 19229598  T

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Target: scaffold0427 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 5755 - 5879
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgt---gcagaatctgg 116  Q
    ||||||||||||| |||  |  ||| |||||||||||||||||||| | | |  ||| ||||||||| ||||| ||||||||| ||   ||||||||| |    
T  5755 aggcggataaattccaatgacagtcttcgtgacgcctcaggttaatgctatccattt-aattttgcaggtttaatttctagtttgttttgcagaatctag 5853  T
Q  117 ttcgtggttatttgaagttgcagttg 142  Q
    ||||| ||||||||||||||| ||||    
T  5854 ttcgttgttatttgaagttgcggttg 5879  T

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