View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_high_3 (Length: 586)
Name: NF17942_high_3
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Complemental strand, 40220276 - 40219836
Alignment:
| Q |
6 |
aggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220276 |
aggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcc |
40220177 |
T |
|
| Q |
106 |
aaagactggaagggtataagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaagg |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220176 |
aaagactggaagggtatcagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaagg |
40220077 |
T |
|
| Q |
206 |
cgttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220076 |
cgttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgag |
40219977 |
T |
|
| Q |
306 |
tccgaggtcgatggcgaagaaactttctggcactgttaatgaggttcttggtacgtgtgtgtctgttggatgtaccgtggatggcaaggctcctaaggac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40219976 |
tccgaggtcgatggcgaagaaactttctggcactgttaatgaggttcttggtacgtgtgtgtctgttggatgtaccgtggatggcaaggctcctaaggac |
40219877 |
T |
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| Q |
406 |
ttgcagcaggaaattaatggcggagtggttgaaatccctgc |
446 |
Q |
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| T |
40219876 |
ttgcagcaggaaattaatggcggagtggttgaaatccctgc |
40219836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 40219792 - 40219735
Alignment:
| Q |
515 |
gagcgtattacactttatttgtcttgtattgtgttataaaattgttaatttggttttg |
572 |
Q |
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| T |
40219792 |
gagcgtattacactttatttgtcttgtattgtgttataaaattgttaatttggttttg |
40219735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 21783186 - 21783603
Alignment:
| Q |
7 |
ggcggtgaggtgggtgcggcaagttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgcca |
106 |
Q |
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|||||||| || || || || ||||| || ||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||| || || | || || | |
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| T |
21783186 |
ggcggtgaagtcggagccgccagttccctcgctcccaagatcggtcctctcggtctctcaccaaagaagatcggagaagacatcgccaaagaaaccgcaa |
21783285 |
T |
|
| Q |
107 |
aagactggaagggtataagggtgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaaggc |
206 |
Q |
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| || ||||||||| | |||||||||| |||||||| ||| || ||||||||||| || | | || ||||| || || |||| || || |||||||| |
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| T |
21783286 |
aggattggaagggtctgagggtgacagtcaagctcaccgttcagaatcgtcaggctaaggtcgctgttgttccgtctgcggctgcgctggttatcaaggc |
21783385 |
T |
|
| Q |
207 |
gttgaaagagccggagcgtgaccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgagt |
306 |
Q |
| |
|
||||| || || || | || ||||||||||| ||| | ||||| || |||||||| || || ||||| ||||| ||||| ||||| | | |||||| |
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| T |
21783386 |
tttgaaggaaccagaaagggatcgcaagaagactaagaacatcaagcataatgggaatatctctcttgatgatgttattgagattgcaaagattatgaag |
21783485 |
T |
|
| Q |
307 |
ccgaggtcgatggcgaagaaactttctggcactgttaatgaggttcttggtacgtgtgtgtctgttggatgtaccgtggatggcaaggctcctaaggact |
406 |
Q |
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| T |
21783486 |
ccgaggtcgatggcgaaagagcttgccggaactgtgaaggagattttggggacctgtgtttctgttgggtgtactgttgatgggaaagatccaaaggatt |
21783585 |
T |
|
| Q |
407 |
tgcagcaggaaattaatg |
424 |
Q |
| |
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|||||||||| ||||||| |
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| T |
21783586 |
tgcagcaggagattaatg |
21783603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 28372264 - 28372646
Alignment:
| Q |
28 |
agttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgccaaagactggaagggtataaggg |
127 |
Q |
| |
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||||| || ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| || || | || || ||||||||||||||| | | | |
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| T |
28372264 |
agttccctcgctcccaagatcggaccactcggtctctctccaaaaaagatcggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtg |
28372363 |
T |
|
| Q |
128 |
tgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttccttcggcatctgcacttgtcatcaaggcgttgaaagagccggagcgtga |
227 |
Q |
| |
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| |||| |||||||| ||| || |||||||| ||| || ||| ||| ||||| || || | || || || || ||||| ||||| || || ||| | || |
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| T |
28372364 |
tcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagaga |
28372463 |
T |
|
| Q |
228 |
ccgcaagaagaccaagcatatcaaccacaatgggaacatatcccttgaggatgtcattgacattgctagggttatgagtccgaggtcgatggcgaagaaa |
327 |
Q |
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| |||||||| ||| |||| || || |||||||| || || ||||| ||||| ||||| ||||| | | |||||| ||||| || ||||||||| | |
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| T |
28372464 |
taggaagaagactaagaatattaagcataatgggaatatttcgcttgatgatgttattgagattgcgaagattatgaagccgagatctatggcgaaggag |
28372563 |
T |
|
| Q |
328 |
ctttctggcactgttaatgaggttcttggtacgtgtgtgtctgttggatgtaccgtggatggcaaggctcctaaggacttgca |
410 |
Q |
| |
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||| | || ||||| || ||| ||||||| || ||||| |||||||| ||||| || ||||| || | ||| ||||| ||||| |
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| T |
28372564 |
cttgcgggtactgtgaaggagattcttgggacctgtgtttctgttgggtgtactgttgatgggaaagatccaaaggatttgca |
28372646 |
T |
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