View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_high_4 (Length: 537)
Name: NF17942_high_4
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 128 - 526
Target Start/End: Original strand, 3081133 - 3081534
Alignment:
| Q |
128 |
atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081133 |
atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
3081232 |
T |
|
| Q |
228 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
327 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3081233 |
gcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
3081332 |
T |
|
| Q |
328 |
caatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagta |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081333 |
caatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcaacatcaaaagcttccaatgatccttctgtcaatgaagtaacagta |
3081432 |
T |
|
| Q |
428 |
acaaatattttacc----taggtagtggatataacatggtaaataatttggactc-aatttcctatattattgaaattttctaaaatcacttcagtaagt |
522 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| |||| |||||||||||||| |
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|
| T |
3081433 |
acaaatattttacctaggtaggtagtggatataacatggtaaataatttggactcaaatttcc--tattatcgaaatttcttaaagtcacttcagtaagt |
3081530 |
T |
|
| Q |
523 |
tcat |
526 |
Q |
| |
|
|||| |
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|
| T |
3081531 |
tcat |
3081534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 128 - 457
Target Start/End: Original strand, 3095570 - 3095899
Alignment:
| Q |
128 |
atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3095570 |
atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
3095669 |
T |
|
| Q |
228 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3095670 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
3095769 |
T |
|
| Q |
328 |
caatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagta |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | | ||||| |||| ||||||||||| ||||||||||| |||||||| ||| || |
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|
| T |
3095770 |
caatcctaatcatccagcattttcagttggaagaaaagtaactgatgatcaatcaacatctaaagcttccaaagatccttctgttaatgaagttacaata |
3095869 |
T |
|
| Q |
428 |
acaaatattttacctaggtagtggatataa |
457 |
Q |
| |
|
||||| |||| ||||||||| |||||||| |
|
|
| T |
3095870 |
tcaaatgtttttcctaggtaggggatataa |
3095899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 130 - 367
Target Start/End: Complemental strand, 4547359 - 4547122
Alignment:
| Q |
130 |
atgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||| || || |
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|
| T |
4547359 |
atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgt |
4547260 |
T |
|
| Q |
230 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca |
329 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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|
| T |
4547259 |
atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttccca |
4547160 |
T |
|
| Q |
330 |
atcctaatcatccagcattttcagttggaagaaaagta |
367 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4547159 |
atcctaaacatcctgcattttcagttggaagaaaagta |
4547122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 456
Target Start/End: Complemental strand, 4547117 - 4547060
Alignment:
| Q |
399 |
atgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatata |
456 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||| ||||||||| ||||||| |
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|
| T |
4547117 |
atgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatata |
4547060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4547711 - 4547669
Alignment:
| Q |
1 |
agtcttcttatatatgtgagtttttctcctttcatattagtta |
43 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
4547711 |
agtcttcttatatatgtaagtttttctcctttcgtattagtta |
4547669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 4547618 - 4547578
Alignment:
| Q |
46 |
aattaatagggttaactatattattgatttctataaaattg |
86 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||| |
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|
| T |
4547618 |
aattaacagggttaactataatattgatttctttaaaattg |
4547578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 362
Target Start/End: Complemental strand, 15696681 - 15696453
Alignment:
| Q |
134 |
atgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatac |
233 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||| | |||||||||| | ||||| |||||| || ||| ||||| || ||||||| |
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|
| T |
15696681 |
atgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatgaagtgcatac |
15696582 |
T |
|
| Q |
234 |
acattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcc |
333 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| | ||| ||||||||||||||| || |||| ||||||| |||||||||||| | |||| || || |
|
|
| T |
15696581 |
acattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaatgcccattccaaaacc |
15696482 |
T |
|
| Q |
334 |
taatcatccagcattttcagttggaagaa |
362 |
Q |
| |
|
|| || || ||||||||||| ||||||| |
|
|
| T |
15696481 |
caagcaaccggcattttcagtaggaagaa |
15696453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 354
Target Start/End: Complemental strand, 15721894 - 15721754
Alignment:
| Q |
214 |
tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
313 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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|
| T |
15721894 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
15721795 |
T |
|
| Q |
314 |
acaatgacacttcccaatcctaatcatccagcattttcagt |
354 |
Q |
| |
|
||||| || ||||| ||||| || | |||||||||||||| |
|
|
| T |
15721794 |
acaataacccttccaaatcccaagccaccagcattttcagt |
15721754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 362
Target Start/End: Complemental strand, 15692193 - 15692058
Alignment:
| Q |
227 |
tgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttc |
326 |
Q |
| |
|
|||||| |||| ||| | |||||||| ||||||||||| | ||||||||||||||||| | ||||||||||||| | || |||||||||||||| |||| |
|
|
| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttc |
15692094 |
T |
|
| Q |
327 |
ccaatcctaatcatccagcattttcagttggaagaa |
362 |
Q |
| |
|
| || || || || || ||||||||| ||||||||| |
|
|
| T |
15692093 |
caaaacccaaacaacctgcattttcaattggaagaa |
15692058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 15703189 - 15703053
Alignment:
| Q |
226 |
atgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacactt |
325 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||| ||| ||||||||||||||| || ||| | ||||||| ||||||||||||| | ||| |
|
|
| T |
15703189 |
atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaatgcctctt |
15703090 |
T |
|
| Q |
326 |
cccaatcctaatcatccagcattttcagttggaagaa |
362 |
Q |
| |
|
|| || || | | ||||||||||||||||||||| |
|
|
| T |
15703089 |
ccgaaacccatgaaagcagcattttcagttggaagaa |
15703053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 362
Target Start/End: Complemental strand, 15763724 - 15763592
Alignment:
| Q |
230 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||| ||| ||| ||||||| ||||| ||| | | ||||| |
|
|
| T |
15763724 |
atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgctagggagtgatacagtagctcttccac |
15763625 |
T |
|
| Q |
330 |
atcctaatcatccagcattttcagttggaagaa |
362 |
Q |
| |
|
| || ||||| ||||||||||||||||| |||| |
|
|
| T |
15763624 |
aacccaatcaaccagcattttcagttgggagaa |
15763592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
| Q |
230 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca |
287 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
15804756 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca |
15804699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 15799142 - 15799056
Alignment:
| Q |
230 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacaca |
316 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| |||||| ||||||| ||||||||| |
|
|
| T |
15799142 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca |
15799056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
| Q |
214 |
tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaa |
259 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
47593954 |
tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa |
47593999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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