View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_high_9 (Length: 381)
Name: NF17942_high_9
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 38 - 364
Target Start/End: Original strand, 23047510 - 23047836
Alignment:
| Q |
38 |
atttataacatttacttgcaatacaaactgtcctgaaattcaaagagttgttggacctctgcatctaaaagcacatgaccgtccagatatagtagcaaga |
137 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23047510 |
atttataacatttacttgcaatacaaactggtctgaaattcaaagagttgttggacctcttcatctaaaagcacatgaccgtccagatatagtagcaaga |
23047609 |
T |
|
| Q |
138 |
gttttcaaaatcaaatttgacgaacttttgaatgatttaactaaaaatcatattcttggcagagtagttgcatgtaagtatttataatcaaatttgccac |
237 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23047610 |
gttttcaaaatcaaattggacgaacttttgaatgatttaactaaaaatgatatccttggtagagtagttgcatgtaagtatttataatcaaatttgccac |
23047709 |
T |
|
| Q |
238 |
agtttgcttcataatttattactaattcttatctattatcttaacatatttgtatactattgagttccaaaagtgagggttgccacatgcacatttactg |
337 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23047710 |
agtttgcttcataatttattactgattcttatctattatcttaacagatttgtatactattgagttccaaaagtgagggttgccacatgcacatttactg |
23047809 |
T |
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| Q |
338 |
ttgtttttacacccttcaagcaaatat |
364 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23047810 |
ttgtttttacacccttcaagcaaatat |
23047836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 26224612 - 26224719
Alignment:
| Q |
109 |
cacatgaccgtccagatatagtagcaagagttttcaaaatcaaatttgacgaacttttgaatgatttaactaaaaatcatattcttggcagagtagttgc |
208 |
Q |
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|||| ||||| ||||| || ||||||||||||||||||| || ||||| |||||| | |||||||| || ||||| ||||| ||||||| ||||||||| |
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| T |
26224612 |
cacacgaccgaccagacatcatagcaagagttttcaaaattaagtttgatgaacttctcaatgatttgacaaaaaaacatatccttggcaaagtagttgc |
26224711 |
T |
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| Q |
209 |
atgtaagt |
216 |
Q |
| |
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|||||||| |
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| T |
26224712 |
atgtaagt |
26224719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 33544176 - 33544283
Alignment:
| Q |
109 |
cacatgaccgtccagatatagtagcaagagttttcaaaatcaaatttgacgaacttttgaatgatttaactaaaaatcatattcttggcagagtagttgc |
208 |
Q |
| |
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|||| ||||| ||||| || ||||||||||||||||||| || ||||| |||||| | |||||||| || ||||| ||||| ||||||| ||||||||| |
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| T |
33544176 |
cacacgaccgaccagacatcatagcaagagttttcaaaattaagtttgatgaacttctcaatgatttgacaaaaaaacatatccttggcaaagtagttgc |
33544275 |
T |
|
| Q |
209 |
atgtaagt |
216 |
Q |
| |
|
|||||||| |
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| T |
33544276 |
atgtaagt |
33544283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 2678155 - 2678183
Alignment:
| Q |
11 |
ttattctgtacatgtcgatttaccttcat |
39 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
2678155 |
ttattctgtacatgtcgatttaccttcat |
2678183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 26532756 - 26532784
Alignment:
| Q |
11 |
ttattctgtacatgtcgatttaccttcat |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
26532756 |
ttattctgtacatgtcgatttaccttcat |
26532784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 22070955 - 22070913
Alignment:
| Q |
285 |
atttgtatactattgagttccaaaagtgagggttgccacatgc |
327 |
Q |
| |
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|||||||||||||||| || |||||| |||||||||||||||| |
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| T |
22070955 |
atttgtatactattgaatttcaaaagagagggttgccacatgc |
22070913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 24249192 - 24249164
Alignment:
| Q |
11 |
ttattctgtacatgtcgatttaccttcat |
39 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
24249192 |
ttattctgtacatgtcgatttaccttcat |
24249164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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