View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_1 (Length: 860)
Name: NF17942_low_1
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 19 - 848
Target Start/End: Complemental strand, 10202143 - 10201314
Alignment:
| Q |
19 |
gaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatctctttttccttagattgtactccacttttatcaatttgttca |
118 |
Q |
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| T |
10202143 |
gaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttccttagattgtactccacttttatcaatttgttca |
10202044 |
T |
|
| Q |
119 |
ttttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202043 |
ttttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgagggcattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccg |
10201944 |
T |
|
| Q |
219 |
gccctccnnnnnnnngtgttgcaacattttgaatggtttcagattctattagttccgagaaaccaaatgacgtagtaagtcctctttctataattacacc |
318 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10201943 |
gccctccaaaaaaaagtgttgcaacattttgaatggtttcagattctattagttccgagaaaccaaatgatgtagtaagtcctctttctataattacacc |
10201844 |
T |
|
| Q |
319 |
gacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcgattcgttgatgcttgtgaaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201843 |
gacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcgattcgttgatgcttgtgaaag |
10201744 |
T |
|
| Q |
419 |
ggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactgtccttttttgttggaccaaaa |
518 |
Q |
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| T |
10201743 |
ggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactgtccttttttgttggaccaaaa |
10201644 |
T |
|
| Q |
519 |
tctttgtgtcttcagtgaaggtatctagggcattattaatgtccaccacatcatttccaccaaaggcttcgtcatcatcgctgatatcgccattttcttt |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201643 |
tctttgtgtcttcagtgaaggtatctagggcattattaatgtccaccacatcatttccaccaaaggcttcgtcatcatcgctgatatcgccattttcttt |
10201544 |
T |
|
| Q |
619 |
ttcatggtataacaagtttgacttgattttcttcacaagctctattaagtgcattaaataagtggtagaaggtgatgttttagagccatgtattgctagt |
718 |
Q |
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| T |
10201543 |
ttcatggtataacaagtttgacttgattttcttcacaagctctattaagtgcattaaataagtggtggaaggtgatgttttagagccatgtattgctagt |
10201444 |
T |
|
| Q |
719 |
attgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgt |
818 |
Q |
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| T |
10201443 |
attgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgt |
10201344 |
T |
|
| Q |
819 |
ttgtaaacattttctcttccccctttgcta |
848 |
Q |
| |
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||| |||||||||||||||||||||||||| |
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| T |
10201343 |
ttgaaaacattttctcttccccctttgcta |
10201314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 299 - 840
Target Start/End: Complemental strand, 51741065 - 51740527
Alignment:
| Q |
299 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
398 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||| | |
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| T |
51741065 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
51740966 |
T |
|
| Q |
399 |
ttcgttgatgcttgtgaaagggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactgt |
498 |
Q |
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||||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||| || |||||||||| ||| ||||||| || |||| |
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| T |
51740965 |
ttcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgc |
51740866 |
T |
|
| Q |
499 |
ccttttttgttggaccaaaatctttgtgtcttcagtgaaggtatctagggcattattaatgtccaccacatcatttccaccaaaggcttcgtcatcatcg |
598 |
Q |
| |
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|||| |||| || |||||||||||||||||| ||||||| | ||||| | ||||||||| || || || ||||| |||||| | || ||||| || |
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| T |
51740865 |
ccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccata---atcatcatcgtca |
51740769 |
T |
|
| Q |
599 |
ctgatatcgccattttctttttcatggtataacaagtttgacttgattttcttcacaagctctattaagtgcattaaataagtggtagaaggtgatgttt |
698 |
Q |
| |
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|| | || ||||||| |||||||| | || || || || ||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
51740768 |
ctaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttt |
51740669 |
T |
|
| Q |
699 |
tagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtgg |
798 |
Q |
| |
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|||| ||||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
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| T |
51740668 |
tagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtgg |
51740569 |
T |
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| Q |
799 |
ttcaattgttgtatggttgtttgtaaacattttctcttcccc |
840 |
Q |
| |
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|||||| | ||||||||| |||| ||||||||||||||||| |
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| T |
51740568 |
ttcaatagctgtatggttatttgagaacattttctcttcccc |
51740527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 51741337 - 51741139
Alignment:
| Q |
24 |
tattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatctctttttccttagattgtactccacttttatcaatttgttcattttc |
123 |
Q |
| |
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||||||||||||||| || |||| |||||||| || || ||||||||||| |||||||| | | |||||||||||||| ||||| ||||| || | |
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| T |
51741337 |
tattgtcaatctcat---tcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactt---tcaatatgttctttatg |
51741244 |
T |
|
| Q |
124 |
taatttagac---gacaacaaaaatctaatgattgtcaagttaattcgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggc |
220 |
Q |
| |
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| | |||| ||||| |||||||| |||||||||| ||||| ||||| ||||||||||| | |||||||||||| | |||||| || || ||||| |
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| T |
51741243 |
tgacaaagacgaagacaaaaaaaatctgatgattgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccggg |
51741144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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