View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_low_11 (Length: 379)
Name: NF17942_low_11
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_11 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0912 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 26027909 - 26028259
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
26027909 |
aatttaaggccacatcccactcttcccgacgttgttcacccttcaaactactggctataacagcaattgcaattgttaacattttgcattcatatgcaat |
26028008 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
||||| || |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
26028009 |
tttacggcctttttcgagcaaatttttagttgaagttttgcttagaccggcatgcctttggaacatgatccatgtgtcttcttcagataagagatctagt |
26028108 |
T |
|
| Q |
218 |
tggattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatcccta |
317 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26028109 |
tggattgtcttactacgacctaatctgttgcacaccaacagattgcaggcggttacaagaattttacagcctttgtgattgccactgtatggaatcccta |
26028208 |
T |
|
| Q |
318 |
ttacattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26028209 |
gttcattaaaatcgatatctccccacacatcatccaatattagaagaatct |
26028259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 31)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 368
Target Start/End: Complemental strand, 27961695 - 27961350
Alignment:
| Q |
23 |
aaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttac |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
27961695 |
aaggccacatcccactcttcccgacgttgtttgcccttcaaactactggctatagcagcaattgcaactggtaaccttttgcattcatttgaaattttac |
27961596 |
T |
|
| Q |
123 |
atcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggat |
222 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
27961595 |
ggcccttttcgagcaaatctttagttgaaacttttcttagatcagcatgcctttggaacatcatccacgcgtcttctacagataagagatccagttggat |
27961496 |
T |
|
| Q |
223 |
tgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattaca |
322 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||| ||||||| ||| |||| ||| |||||||||||||||| ||||||||||||||| || |
|
|
| T |
27961495 |
tgttttactgcatcctaatctgttgcacaccaacttattgcgagtggttataagaattcgacaacctttgtgattgtcacgatatggaatccctatttca |
27961396 |
T |
|
| Q |
323 |
ttaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
27961395 |
ttaaaatcgatatctccccacacatcatccaatattataagaatct |
27961350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 368
Target Start/End: Complemental strand, 28176845 - 28176509
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctttt |
131 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
28176845 |
tcccactcttccggacgttgtatgcccttcaaactgctggcgatagcagcaattgcaatcggtaaccttttgcattcatttgcaattttacgcccttttt |
28176746 |
T |
|
| Q |
132 |
cgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttact |
231 |
Q |
| |
|
| || | | ||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
28176745 |
caagcagatttttagttgaaatttcgctaagaccagcatgccttttgaacatgatccatgcgtcttcttcagataacagatcgagttgcattgtcttact |
28176646 |
T |
|
| Q |
232 |
gcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcg |
331 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28176645 |
gcatcctaatctgttacacaccaagagattgcgcgtggttacaagaattctacagcctttgtgattgtcactgtatggaatccctatttcattaaaatcg |
28176546 |
T |
|
| Q |
332 |
atatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
28176545 |
atgtctccccacacatcatccaatattagaagaatct |
28176509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 11407622 - 11407276
Alignment:
| Q |
22 |
taaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaatttta |
121 |
Q |
| |
|
|||||||| |||||| ||||| ||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11407622 |
taaggccatatcccattcttctcgatgtttctcacccttcaaactactggctgtaacagcaattgcaattggtaaccttttgcattcagttgcaatttta |
11407523 |
T |
|
| Q |
122 |
catcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttgga |
221 |
Q |
| |
|
| |||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||| |
|
|
| T |
11407522 |
cggccctttaagagaaaaaatttagatgaaattttgcttagaccagcatgcctttggaacatgatccacgcatcttcttcagataagagatgcaattgga |
11407423 |
T |
|
| Q |
222 |
ttgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattac |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || ||||||||||||| |||||| ||||||||||||||| ||| |||||| | |||||||||||| | |
|
|
| T |
11407422 |
ttgtcttactgcatcttaatctgttgcacactaagagattgcgcgtgggtacaagaattctacagcctttgagatagtcactatcaggaatccctatttc |
11407323 |
T |
|
| Q |
322 |
attaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11407322 |
gtcaaaattgatatctccccacacatcatccaatattagaagaatct |
11407276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 368
Target Start/End: Complemental strand, 28078222 - 28077886
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctttt |
131 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||| | |
|
|
| T |
28078222 |
tcccactcttccggacgttgtatgcccttcaaactactggcgatagcagcaattgcaattggcaaccttttgcattcatttgcaatttttcggcccttgt |
28078123 |
T |
|
| Q |
132 |
cgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttact |
231 |
Q |
| |
|
| | ||| |||| |||||| ||| || |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28078122 |
caatcaaatttttggttgaaatttcgcgtagaccggcatgtctttcgaacatgatccatgcgtcttcttcagataagagatccagttgaattgtcttact |
28078023 |
T |
|
| Q |
232 |
gcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcg |
331 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||| |||| | ||||||||||||| ||| ||||| | |
|
|
| T |
28078022 |
gcatcctaatctgttgcacaccaagagattgcgagtggttacaagaattctacagcctctgtgattaccactatctggaatccctatttcatcaaaattg |
28077923 |
T |
|
| Q |
332 |
atatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28077922 |
atatctccccacacatcatctaatattagaagaatct |
28077886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 56 - 368
Target Start/End: Original strand, 28473635 - 28473947
Alignment:
| Q |
56 |
cccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaagttt |
155 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || ||| ||||||||||| ||| |
|
|
| T |
28473635 |
cccttcaaactactggcgataacagcaattgcaattggtaaccctttgcattcatttgcaattttacggcccttgtcaagcaaacttttagttgaaattt |
28473734 |
T |
|
| Q |
156 |
tgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcacaccaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28473735 |
ctgttagaccagcatgcctttggaacatggtccatgcctcttcatcagataagagctccagttggattgtcttactgcatcttaatctgttgcacactaa |
28473834 |
T |
|
| Q |
256 |
cagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaat |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| |||||||||||||| || || ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
28473835 |
gagattgcgcgtggttacaagaattctacatcccttgtggttgtcactgtatgggataccaatttcattaaaatcaatatctccccacacatcatccaat |
28473934 |
T |
|
| Q |
356 |
attagaataatct |
368 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
28473935 |
attagaagaatct |
28473947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 28514618 - 28514966
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| ||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28514618 |
tttaaggccccatcccactcttccggatgttgtatgcccttcaaactactggcgataacagaaattgcaattggtaaccctttgcattcatttgcaattt |
28514717 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
||| ||||| || || ||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
28514718 |
tacggcccttgtcaagcaaacttttagttgaaatttctgttagaccagcatgcctttggaacatggtccatgcctcttcatcagataagagctccagttg |
28514817 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| | ||| |||| ||||||||||| | | ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
28514818 |
gattgtcttactgcatcttaatttgttgcacactgagagactgcgtgtggttacaagaactatacagcctttgtgattgtcactgtatggaataccaatt |
28514917 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28514918 |
tcattaaaatcaatatctccccacacatcatccaatattagaagaatct |
28514966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 27908625 - 27908277
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27908625 |
tttaaggccacgtcccactcttttggatgttgtattcccttcaaactactagcgataacagcaattgcaattggtaaccctttgcattcatttgcaattt |
27908526 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
||| ||||| | || ||| ||||||||||| ||| |||||||| ||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
27908525 |
tacggcccttggcaagcaaacttttagttgaaatttctgttagaccaacatgcctttggaacatggtccatgcctcttcatcagataagagctccagttg |
27908426 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||| || ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
27908425 |
gaatgtcttactgcatcctaatttcttgcacactaagagactgcgcgtggttataagaattctacagcctttgtgattgtcactgtatggaataccaatt |
27908326 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
27908325 |
tcattaaaatcaatatttccccacacatcatccaatattagaagaatct |
27908277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 17750620 - 17750970
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17750620 |
aatttaaggcccattcccactcttccggacgttgtatccccttcaaactgctggcgatgacagcaattgcaataggtaaccttttgcattcatttgcaat |
17750719 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||| || ||| |
|
|
| T |
17750720 |
tttacggcccttgtcgagaaaaattttagttgaatttttgcttagaccagcatgccttttgaacatggtccacgcatcttcttcagataagagctctagt |
17750819 |
T |
|
| Q |
218 |
tggattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatcccta |
317 |
Q |
| |
|
|||| ||| ||||||||| ||||| |||| |||||||||| | |||| ||||||| ||| ||||||||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
17750820 |
tggactgttttactgcattctaatttgttacacaccaacatactgcgtgtggttataagaattctacagccattgtgatcgccactttgtggaatcccta |
17750919 |
T |
|
| Q |
318 |
ttacattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17750920 |
tttcaacaaaattgatatctccccacacatcatccagtattagaagaatct |
17750970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 19051940 - 19052290
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19051940 |
aatttaaggcccattcccactcttccggacgttgtatccccttcaaactgctggcgatgacagcaattgcaataggtaaccttttgcattcatttgcaat |
19052039 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||| || ||| |
|
|
| T |
19052040 |
tttacggcccttgtcgagaaaaattttagttgaatttttgcttagaccagcatgccttttgaacatggtccacgcatcttcttcagataagagctctagt |
19052139 |
T |
|
| Q |
218 |
tggattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatcccta |
317 |
Q |
| |
|
|||| ||| ||||||||| ||||| |||| |||||||||| | |||| ||||||| ||| ||||||||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
19052140 |
tggactgttttactgcattctaatttgttacacaccaacatactgcgtgtggttataagaattctacagccattgtgatcgccactttgtggaatcccta |
19052239 |
T |
|
| Q |
318 |
ttacattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19052240 |
tttcaacaaaattgatatctccccacacatcatccagtattagaagaatct |
19052290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 58 - 368
Target Start/End: Complemental strand, 27950970 - 27950660
Alignment:
| Q |
58 |
cttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaagttttg |
157 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||||| | |||||| |||||||||||| ||| ||||| ||||| ||| ||||||||||| ||||| |
|
|
| T |
27950970 |
cttcaaactactggcgataacagaaattgcaattggtaaacctttgcactcatttgcaattctacggcccttgtcgagcaaacttttagttgaaattttg |
27950871 |
T |
|
| Q |
158 |
cttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcacaccaaca |
257 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||| ||| | |||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
27950870 |
tttagatcagcatgccattggaacatggtccatgcctctccaacagataagagctcgagttggattgtcttactgcatcccaatttgttgcataccaagg |
27950771 |
T |
|
| Q |
258 |
gattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaatat |
357 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
27950770 |
gattgcgagtggttacaagaattctacagcctttgtgattgtcactgtcaggaatccctatttcatcaaaattgataactccccacacatcatccaatat |
27950671 |
T |
|
| Q |
358 |
tagaataatct |
368 |
Q |
| |
|
||||| ||||| |
|
|
| T |
27950670 |
tagaagaatct |
27950660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 27436025 - 27436373
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||| | || ||||||||||||| |||||||||||||||||| | | |||||||||||| ||||| |
|
|
| T |
27436025 |
tttaaggccacatcccatacttctagacgttgctcacccattaatctactggctatagtagcaattgcaattggtaatcctctgcattcatttgtaattt |
27436124 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
||| ||||| || || ||| ||| | ||||| ||| ||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
27436125 |
tacgacccttgtcaagcaaactttgatttgaaatttcacttagaccagcccacctttggaacatgatccaggcttcttcttcagataagaaatccagttg |
27436224 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| || | | ||| |||||||||||| |||||||||||||||||| ||| | | | ||||||||||||| |
|
|
| T |
27436225 |
gattgtcttactgcatcttaatctcttgcacactaagaaaatgcacgtggttacaagaattctacagcctttgtgactgtaaatatctggaatccctatt |
27436324 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
27436325 |
tcatgaaaattgatatctccacacacatcatctaatattagaagaatct |
27436373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 27465650 - 27465995
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
27465650 |
tttaaggcgccatcccactcttcaagacgttgttcacccttcaaactactggcaataacagcaatggcaattggtaatcctttgcactcatttgcaattt |
27465749 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
||| ||||| | ||| ||| |||| ||||| ||| |||||||||||||| |||| ||||||| |||||||||| | |||||||||||| || ||||| |
|
|
| T |
27465750 |
tacggcccttgttgagcaaatatttatttgaaatttcacttagaccagcatgtcttttgaacatggtccatgcgtccttttcagataagagctctagttg |
27465849 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
| |||| |||||||| ||||| ||||||||||| | | |||||| ||||||| ||| |||||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
27465850 |
aactgtcctactgcattctaatttgttgcacaccgaaacattgcgtgtggttataagaattctacagcctttgtgattatcactatgtggaatccctatt |
27465949 |
T |
|
| Q |
320 |
acattaaaatcgatatctcc---ccacacatcatccaatattagaa |
362 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27465950 |
tcatcaaaattgatatctccccaccacacatcatccaatattagaa |
27465995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 28046267 - 28045931
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28046267 |
tttaaggccccatcccactcttccggatgttgtatgcccttcaaactactggcgataacagcaattgcaattggtaaccctttgcattcatttgcaattt |
28046168 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
|||| ||||| ||||| |||||||||| ||| ||| |||||||||||| ||||||||||||| ||||||| ||||| ||| |||||| | |||||| |
|
|
| T |
28046167 |
tacagcccttgtcgagcaaaattttaggtgacatttcttttagaccagcatacctttggaacatggtccatgcttcttcatcatataagaccttcagttg |
28046068 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || | || ||||| ||||||| ||| |||||| || |||||||||||||| |||||||||||| |
|
|
| T |
28046067 |
gattgtcttattgcatcctaatctgttgcagacagagagtttgcgtgtggttataagaattctagagtctttgtgattgtca------ggaatccctatt |
28045974 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaa |
362 |
Q |
| |
|
|| ||||| |||| | ||||||||||||||||||| |||| |
|
|
| T |
28045973 |
ttatcaaaattgataacatcccacacatcatccaatatcagaa |
28045931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 56 - 368
Target Start/End: Complemental strand, 28128747 - 28128441
Alignment:
| Q |
56 |
cccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaagttt |
155 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||| ||||| | ||||||||||||||||||||| | ||||| ||||| ||| || || ||| ||| |
|
|
| T |
28128747 |
cccttcaaactactggcgataacaacaattgcaaccggtaatcctttgcattcatttgcaattttgcggcccttgtcgagcaaacttgcaggtgacattt |
28128648 |
T |
|
| Q |
156 |
tgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcacaccaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| || | |
|
|
| T |
28128647 |
cttttagaccagcatgcctttggaacatggtccatgcttcttcatcagataagacctccagttggattgtcttattgcatcctaatctgttgcagacata |
28128548 |
T |
|
| Q |
256 |
cagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaat |
355 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| || |||||||||| | ||||||||||||||||| |
|
|
| T |
28128547 |
gagattgcgcgtggttacaagaattctacagtctttgtgattgtca------ggaatccctattttatcaaaatcgataacatcccacacatcatccaat |
28128454 |
T |
|
| Q |
356 |
attagaataatct |
368 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
28128453 |
attagaagaatct |
28128441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 27997422 - 27997093
Alignment:
| Q |
30 |
catcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctt |
129 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||| ||| |||| ||||| |
|
|
| T |
27997422 |
catcccacacttctagacgatgttctcccttcaaactactggctatagcaacaattgcaactggtagccctttgcattcatttgaaatattacggccctt |
27997323 |
T |
|
| Q |
130 |
ttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtctta |
229 |
Q |
| |
|
||||| ||| ||||||||||| ||| ||| || ||||||||||||| ||||||| || || ||||||||| |||||||||| ||||||| |
|
|
| T |
27997322 |
gtcgagcaaacttttagttgaaattt---------cagaatacctttggaacatggtccatgcctcctcaacagataagacctccagttggactgtctta |
27997232 |
T |
|
| Q |
230 |
ctgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaat |
329 |
Q |
| |
|
|||||| |||| |||||||||| || ||| |||| ||||||||||| ||||||||||||||||||||| |||| | ||||||||||||| || ||||| |
|
|
| T |
27997231 |
ttgcatcttaatgtgttgcacactaagagactgcgtgtggttacaagaattctacagcctttgtgattgccactttgtggaatccctatttcaacaaaat |
27997132 |
T |
|
| Q |
330 |
cgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
27997131 |
tgatatctccccacacatcatccagtattataagaatct |
27997093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 56 - 368
Target Start/End: Complemental strand, 28142678 - 28142372
Alignment:
| Q |
56 |
cccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaagttt |
155 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||| | ||||||||||||||||||||||| ||||| ||||| ||| || ||| ||| ||| |
|
|
| T |
28142678 |
cccttcaaactactggcgataacagcaattgcaactggtaatcctttgcattcatttgcaattttacggcccttgtcgagcaaacttgtaggtgacattt |
28142579 |
T |
|
| Q |
156 |
tgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcacaccaa |
255 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||| ||||||||||||||| ||| || | |
|
|
| T |
28142578 |
cttttagaccagcatgcgtttggaacatggtccatgcttcttcatcagataagacctccagttggattttcttattgcatcctaatctgtggcagacaga |
28142479 |
T |
|
| Q |
256 |
cagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaat |
355 |
Q |
| |
|
||| |||| ||||||||||| ||||||||| |||||||||||||| |||||||||||| || |||||||||||| ||||||||||||| ||| |
|
|
| T |
28142478 |
gagactgcgtgtggttacaagaattctacagtctttgtgattgtca------ggaatccctattttatcaaaatcgatatcatcccacacatcatcaaat |
28142385 |
T |
|
| Q |
356 |
attagaataatct |
368 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
28142384 |
attagaagaatct |
28142372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 52 - 357
Target Start/End: Original strand, 26146501 - 26146806
Alignment:
| Q |
52 |
ttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaa |
151 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||| |||||| | |||||| ||| |||||||||||| |||||| || |||| | |||| | |||| |
|
|
| T |
26146501 |
ttcacccttcaaactgctggcgatagtagcaattgcaactggtaaacatttgcactcaattgcaattttacgtcccttatcaagaatacttttggatgaa |
26146600 |
T |
|
| Q |
152 |
gttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcaca |
251 |
Q |
| |
|
| || |||||| |||||||| ||| |||||||||||||||||||||||||| |||||| || ||||| |||||||| | ||||| | | ||||||| | |
|
|
| T |
26146601 |
ttgttacttagatcagcatgctttttgaacatgatccatgcgtcttcttcagttaagagctctagttgaattgtctttccacatcccattttgttgcata |
26146700 |
T |
|
| Q |
252 |
ccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatc |
351 |
Q |
| |
|
|| ||||||||| ||||||||||| | | | || ||||||||||| ||||| | |||||||||||| ||| ||||| || || | |||| |||||||| |
|
|
| T |
26146701 |
cctccagattgcgtgtggttacaagaactttgcatcctttgtgattatcactatttggaatccctatgtcatcaaaattgagattttcccatacatcatc |
26146800 |
T |
|
| Q |
352 |
caatat |
357 |
Q |
| |
|
|||||| |
|
|
| T |
26146801 |
caatat |
26146806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 28499256 - 28499399
Alignment:
| Q |
225 |
tcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacatt |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||| || ||||| |||||||||||||| || || ||| |||| |
|
|
| T |
28499256 |
tcttactgcatcttaatctgttgcacactaagagattgcgcgtggttacaagaattctacaacccttgtggttgtcactgtatgggataccaatttcatt |
28499355 |
T |
|
| Q |
325 |
aaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28499356 |
aaaatcaatatctccccacacatcatccaatattagaagaatct |
28499399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 28493676 - 28493742
Alignment:
| Q |
56 |
cccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttac |
122 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28493676 |
cccttcaaactactggcgataacagcaattgcaattggtaaccctttgcattcatttgcaattttac |
28493742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 357
Target Start/End: Original strand, 18724634 - 18724959
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctttt |
131 |
Q |
| |
|
||||||||||| || |||| || ||||||||||| || || | || ||||||||||| ||||| |||||||||||| |||||||||||| |||||| | |
|
|
| T |
18724634 |
tcccactcttcacggcgtttttgtcccttcaaactgctagcaacagtagcaattgcaactggtagtcttttgcattcagttgcaattttacgtcccttct |
18724733 |
T |
|
| Q |
132 |
cgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttact |
231 |
Q |
| |
|
||| | | ||| | ||| | | ||||| |||||| || |||||| ||||||| ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
18724734 |
tgaggatactttgggaggaattatcagttagattggcatgcaatttgaacatactccatgcctcttcttcattcaagagatctagttgaattgtcttttc |
18724833 |
T |
|
| Q |
232 |
gcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcg |
331 |
Q |
| |
|
||| | | | |||||| |||| ||||||||| ||||||||||||| | | || ||||||||||| ||||| | |||||||||||| ||| ||||| | |
|
|
| T |
18724834 |
acataccatttggttgcaaaccatcagattgcgtgtggttacaagtactttgcatcctttgtgattatcactctttggaatccctatgtcatcaaaattg |
18724933 |
T |
|
| Q |
332 |
atatctccccacacatcatccaatat |
357 |
Q |
| |
|
| || ||||||||||| ||||||||| |
|
|
| T |
18724934 |
agatttccccacacattatccaatat |
18724959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 26118469 - 26118679
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
|||| ||||| |||||||||||||| |||| || || ||||||||||| ||||| ||| ||||||||||| |||||| ||||||||| | ||| || |
|
|
| T |
26118469 |
aattcaaggcaacatcccactcttcacgacttttttttcccttcaaacttctggcaataatagcaattgcaactggtaatcttttgcataaagttgtgat |
26118568 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
|| | | |||| |||||| | |||| | ||| | ||||||||| | |||| | ||| |||||||||| |||| |||||||||| |||||| |||||| |
|
|
| T |
26118569 |
ttcatgtaccttaccgagaatacttttggaggaaatattgcttagatcggcatacattttgaacatgatcaatgcttcttcttcagttaagagctccagt |
26118668 |
T |
|
| Q |
218 |
tggattgtctt |
228 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26118669 |
tgaattgtctt |
26118679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 26240733 - 26240943
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
|||| ||||| |||||||||||||| | || || || ||||||||||| ||||| ||| |||||||||||||||||| ||||||||| | ||| || |
|
|
| T |
26240733 |
aattcaaggcaacatcccactcttcaccacttttttttcccttcaaacttctggcgataatagcaattgcaattggtaatcttttgcataaagttgtgat |
26240832 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
|| || | |||| |||||| | |||| | ||| | | ||||||| | |||| | ||| |||||||||| |||| |||||||||| |||||| |||||| |
|
|
| T |
26240833 |
ttcacgtaccttaccgagaatacttttggaggaaatatggcttagatcggcatacatttcgaacatgatcaatgcttcttcttcagttaagagctccagt |
26240932 |
T |
|
| Q |
218 |
tggattgtctt |
228 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26240933 |
tgaattgtctt |
26240943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 27369111 - 27369011
Alignment:
| Q |
29 |
acatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccct |
128 |
Q |
| |
|
|||||||||||||| |||| || || ||||||||||| || || | || ||||||||||| |||||| | |||||||||| |||||||||||| ||||| |
|
|
| T |
27369111 |
acatcccactcttcacgacattcttgtcccttcaaactgctagcaacagtagcaattgcaactggtaaacatttgcattcagttgcaattttacgtccct |
27369012 |
T |
|
| Q |
129 |
t |
129 |
Q |
| |
|
| |
|
|
| T |
27369011 |
t |
27369011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 357
Target Start/End: Original strand, 18082642 - 18082821
Alignment:
| Q |
178 |
gaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagt |
277 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||| ||| ||||| |||||||| | || | | | | ||||| ||| ||||||||| ||||||||||| |
|
|
| T |
18082642 |
gaacaagatccatgcctcttcttcatctaagatatcaagttgaattgtctttttacaagccatttttttgcatacctccagattgcgtgtggttacaaga |
18082741 |
T |
|
| Q |
278 |
attctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaatat |
357 |
Q |
| |
|
| | | || | ||||||||||||||| | |||||||||||| |||| |||||| | || ||||||||||||| ||||| |
|
|
| T |
18082742 |
actttgcatcgtttgtgattgtcactatttggaatccctatgacatcaaaatcaagattatcccacacatcatctaatat |
18082821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 27342769 - 27342715
Alignment:
| Q |
81 |
caattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgag |
135 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
27342769 |
caattgcaattggtagtcttttgcattcaattgcaattttacttcccttctcgag |
27342715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 27771933 - 27771855
Alignment:
| Q |
284 |
cagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaatattagaa |
362 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| ||| |||||| || | | ||||||||||||| |||||||||| |
|
|
| T |
27771933 |
cagcctttgtgattatcactatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaa |
27771855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 18033066 - 18033203
Alignment:
| Q |
81 |
caattgcaattggtaaccttttgcattcatttgcaattttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaa |
180 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||| || | | | ||| | ||| ||||||||| | | |||| || |||||| |
|
|
| T |
18033066 |
caattgcaattggtaattgtttgcattcctttgcaattttacatcccttatcaatcacatattttggggaacttttgcttatatcggcataccattggaa |
18033165 |
T |
|
| Q |
181 |
catgatccatgcgtcttcttcagataagagatccagtt |
218 |
Q |
| |
|
|||| |||| || || ||||||||||| || ||||||| |
|
|
| T |
18033166 |
catgttccacgcttcatcttcagataaaagctccagtt |
18033203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 27368884 - 27368783
Alignment:
| Q |
256 |
cagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaat |
355 |
Q |
| |
|
||||||||| ||||||| ||||| | | || ||||||||||| || || | |||||||||||| ||| ||||| || || || |||||||||||||||| |
|
|
| T |
27368884 |
cagattgcgtgtggttataagtaatttgcatcctttgtgattatctctatttggaatccctatgtcatcaaaattgagatttctccacacatcatccaat |
27368785 |
T |
|
| Q |
356 |
at |
357 |
Q |
| |
|
|| |
|
|
| T |
27368784 |
at |
27368783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 26623270 - 26623221
Alignment:
| Q |
80 |
gcaattgcaattggtaaccttttgcattcatttgcaattttacatccctt |
129 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26623270 |
gcaattgcaactggtaattgtttgcattcctttgcaattttacatccctt |
26623221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 27402882 - 27402935
Alignment:
| Q |
266 |
gtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
27402882 |
gtggttacaagaactctacagcctttgtgattgtcccgttttggaatccctatt |
27402935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 27772044 - 27772008
Alignment:
| Q |
173 |
ctttggaacatgatccatgcgtcttcttcagataaga |
209 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
27772044 |
cttttgaacatgatccatgcatcttcttcagataaga |
27772008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 368
Target Start/End: Original strand, 8695979 - 8696315
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctttt |
131 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||| | |
|
|
| T |
8695979 |
tcccactcttccggacgttctatgcccttcaaactactggcgatagcagtaattgcaattggcaaccttttgcattcatttgcaatttttcggcccttgt |
8696078 |
T |
|
| Q |
132 |
cgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttact |
231 |
Q |
| |
|
| || ||| ||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
8696079 |
caagcaaatttttagttgaaatttcgtgtagaccagcatgccttttgaacatgatccatgcgtcttcttcagataagagatcgagttggattgtctttct |
8696178 |
T |
|
| Q |
232 |
gcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcg |
331 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
8696179 |
gcatcctaatctgttacacaccaagagattacgcgtggttacaagaatcctacagcctttgtgattgtcaccgtatggaatcccaatttcattaaaatcg |
8696278 |
T |
|
| Q |
332 |
atatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
8696279 |
atgtctccccacacatcatccaatattagaagaatct |
8696315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 22797 - 22447
Alignment:
| Q |
18 |
aatttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaat |
117 |
Q |
| |
|
||||||||||| ||| |||||||| || |||||| |||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22797 |
aatttaaggcctcattccactctttatgatgttgtttgccctccaaattactggctataacagcaattgcaactggtaaccttttgcattcatttgcaat |
22698 |
T |
|
| Q |
118 |
tttacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagt |
217 |
Q |
| |
|
|| || || |||| | ||| ||| | | ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
22697 |
ttcacggcctatttcaaacaaactttcattcgaagttttgcttaaaccagcatgcctttggaacatgatccacgcgtcttccttagataagagatccagt |
22598 |
T |
|
| Q |
218 |
tggattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatcccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
22597 |
tggattgtcttactgcatcctaatctgtagcacaccaagatattgcgcgtggttacaagaattctacagcctttgtggttgtcactatatggaatcccta |
22498 |
T |
|
| Q |
318 |
ttacattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
22497 |
tttcatcaaaatcgatatcttcccacacatcatccaatattagaagaatct |
22447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 9331545 - 9331893
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
9331545 |
tttaaggccccatcccactcttccggacattgtatgcccttcaaactactggcgatagcagcaattgcaactggtaaacttttgcattcatttgcaattt |
9331644 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| ||| |||||||| ||||| |||| ||||||| |||| || ||||||||||||||||| || ||||| |
|
|
| T |
9331645 |
tatggcccttgtcgagaaaaattttagttgaaatttcgcttagacaagcataacttttgaacatggtccacgcatcttcttcagataagagctctagttg |
9331744 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||||| |||||| ||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||| |
|
|
| T |
9331745 |
gactgtcttactgcattctaatttgttgcacaccaacatattgcgtgtggttataagaattctacaacctttgtgattgcgactttgtggaatccctatt |
9331844 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
9331845 |
tcaacaaaattgatatctccccacacatcatcaagtattagaagaatct |
9331893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 9385328 - 9385676
Alignment:
| Q |
20 |
tttaaggccacatcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattt |
119 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
9385328 |
tttaaggccccatcccactcttccggacattgtatgcccttcaaactactggcgatagcagcaattgcaactggtaaacttttgcattcatttgcaattt |
9385427 |
T |
|
| Q |
120 |
tacatcccttttcgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttg |
219 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| ||| |||||||| ||||| |||| ||||||| |||| || ||||||||||||||||| || ||||| |
|
|
| T |
9385428 |
tatggcccttgtcgagaaaaattttagttgaaatttcgcttagacaagcataacttttgaacatggtccacgcatcttcttcagataagagctctagttg |
9385527 |
T |
|
| Q |
220 |
gattgtcttactgcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctatt |
319 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||||| |||||| ||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||| |
|
|
| T |
9385528 |
gactgtcttactgcattctaatttgttgcacaccaacatattgcgtgtggttataagaattctacaacctttgtgattgcgactttgtggaatccctatt |
9385627 |
T |
|
| Q |
320 |
acattaaaatcgatatctccccacacatcatccaatattagaataatct |
368 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
9385628 |
tcaacaaaattgatatctccccacacatcatcaagtattagaagaatct |
9385676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 357
Target Start/End: Original strand, 74443 - 74768
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctttt |
131 |
Q |
| |
|
||||||||||| || |||| || ||||||||||| || || | || ||||||||||| ||||| |||||||||||| |||||||||||| |||||| | |
|
|
| T |
74443 |
tcccactcttcacggcgtttttgtcccttcaaactgctagcaacagtagcaattgcaactggtagtcttttgcattcagttgcaattttacgtcccttct |
74542 |
T |
|
| Q |
132 |
cgagaaaaattttagttgaagttttgcttagaccagcatgcctttggaacatgatccatgcgtcttcttcagataagagatccagttggattgtcttact |
231 |
Q |
| |
|
|||| | | ||| | ||| | | ||||| ||||||| || |||||| ||||||| ||||||||| |||||||| ||||| ||| | || |
|
|
| T |
74543 |
cgaggatactttgggaggaattatcagttagattagcatgcaatttgaacatactccatgcctcttcttcattcaagagatctagttgaattttgttttc |
74642 |
T |
|
| Q |
232 |
gcatcctaatctgttgcacaccaacagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcg |
331 |
Q |
| |
|
||| | | | |||||| ||| ||||||||| ||||||||||||| | | || ||||||||||| ||||| | |||||||||||| ||| ||||| | |
|
|
| T |
74643 |
acataccatttggttgcataccctcagattgcgtgtggttacaagtactttgcatcctttgtgattatcactctttggaatccctatgtcatcaaaattg |
74742 |
T |
|
| Q |
332 |
atatctccccacacatcatccaatat |
357 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
74743 |
agatttccccacacatcatccaatat |
74768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 586 - 687
Alignment:
| Q |
256 |
cagattgcgcgtggttacaagtattctacagcctttgtgattgtcactgtatggaatccctattacattaaaatcgatatctccccacacatcatccaat |
355 |
Q |
| |
|
||||||||| ||||||||||||| | | || ||||||||||| ||||| | |||||||||||| ||| ||||| || || ||||||||||||||||||| |
|
|
| T |
586 |
cagattgcgtgtggttacaagtaatttgcatcctttgtgattatcactctttggaatccctatgtcatcaaaattgagatttccccacacatcatccaat |
685 |
T |
|
| Q |
356 |
at |
357 |
Q |
| |
|
|| |
|
|
| T |
686 |
at |
687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 362 - 459
Alignment:
| Q |
32 |
tcccactcttcgcgacgttgttcacccttcaaactactggctatagcagcaattgcaattggtaaccttttgcattcatttgcaattttacatccctt |
129 |
Q |
| |
|
||||||||||| | |||| || ||||||||||| || || | || ||||||||||| ||||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
362 |
tcccactcttcatggcgtttttgtcccttcaaactgctagcaacagtagcaattgcaactggtagtcttttgcattcagttgcaattttacgtccctt |
459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University