View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17942_low_16 (Length: 335)

Name: NF17942_low_16
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17942_low_16
NF17942_low_16
[»] chr5 (5 HSPs)
chr5 (1-238)||(14279465-14279712)
chr5 (265-335)||(14281103-14281173)
chr5 (20-74)||(36571867-36571921)
chr5 (45-88)||(8680752-8680795)
chr5 (45-87)||(34528846-34528888)
[»] chr2 (2 HSPs)
chr2 (1-120)||(16441707-16441822)
chr2 (20-75)||(9118483-9118538)
[»] chr4 (6 HSPs)
chr4 (2-87)||(28901755-28901840)
chr4 (20-71)||(7695387-7695438)
chr4 (20-74)||(31335922-31335976)
chr4 (20-74)||(56054904-56054958)
chr4 (20-87)||(23539020-23539086)
chr4 (27-87)||(28447888-28447948)
[»] chr7 (5 HSPs)
chr7 (19-87)||(43201279-43201347)
chr7 (20-87)||(30567157-30567224)
chr7 (27-87)||(37888388-37888448)
chr7 (20-70)||(33078277-33078327)
chr7 (87-120)||(40300000-40300033)
[»] chr6 (3 HSPs)
chr6 (1-74)||(12513661-12513734)
chr6 (20-87)||(30446798-30446865)
chr6 (4-74)||(12502554-12502624)
[»] chr3 (7 HSPs)
chr3 (20-87)||(7008746-7008813)
chr3 (39-87)||(47700281-47700329)
chr3 (20-87)||(15007740-15007807)
chr3 (27-74)||(43476004-43476051)
chr3 (20-75)||(55027420-55027475)
chr3 (45-158)||(46572325-46572432)
chr3 (27-87)||(46136646-46136706)
[»] chr1 (4 HSPs)
chr1 (45-158)||(3754419-3754526)
chr1 (20-74)||(10265330-10265384)
chr1 (1-74)||(36231560-36231633)
chr1 (45-74)||(8471876-8471905)
[»] chr8 (1 HSPs)
chr8 (20-75)||(12271818-12271873)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14279465 - 14279712
Alignment:
Q  1 cgccacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaatttcaacaccctc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||      |||||||||||||    
T  14279465 cgccacgtgtcctctgcgtgtcagacttcaacatgtttacttctttcatctcctctcacattcacatcatttttctatcat------tttcaacaccctc 14279558  T
Q  101 ctacaatggttcaacatgtttagcatggctgtcaactatccctttgcacatagtctaacg----------------tatcataaagttcttgactaaagt 184  Q
    |||||||| |||||||||| |||||||| ||||||||||||| |||||||| ||||||||                ||||||||  || || || |||||    
T  14279559 ctacaatgattcaacatgtatagcatggttgtcaactatcccattgcacatggtctaacgtttgaagtttcttaaatatcataagattttttacgaaagt 14279658  T
Q  185 tacaattttcaggatttcgcctattcagtctcctaagaattaagtatactactc 238  Q
    ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  14279659 tacgattttgaggatttcgccaattcactctcctaagaattaagtatactactc 14279712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 14281103 - 14281173
Alignment:
Q  265 acagcaatacatacagtacgaaatgcgtccgtacgactccgacggctggcccggcatcgaactctcccgcc 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14281103 acagcaatacatacagtacgaaatgcgtccgtacgactccgacggctggcccggcatcgaactctcccgcc 14281173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 36571921 - 36571867
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  36571921 gtcagaattcaacatgtttaattctttcatctactcttacctccacatcattttt 36571867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 8680795 - 8680752
Alignment:
Q  45 ttcatctcctctcacctccacatcatttttctatcattttcaat 88  Q
    |||| |||||||| |||||||||||||||||| |||||||||||    
T  8680795 ttcaactcctctctcctccacatcatttttctctcattttcaat 8680752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 34528888 - 34528846
Alignment:
Q  45 ttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||| |||||||| |||||||||||||||||| ||||||||||    
T  34528888 ttcaactcctctctcctccacatcatttttctctcattttcaa 34528846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16441822 - 16441707
Alignment:
Q  1 cgccacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaatttcaacaccctc 100  Q
    |||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||| |    |||||| |||||||||||      
T  16441822 cgccacgtgtcccttgcgtgtcagatttcaacatgtttaactctttcatctcctctcacttccacatcattttttt----ttttcattttcaacacccaa 16441727  T
Q  101 ctacaatggttcaacatgtt 120  Q
     |||||||||||||||||||    
T  16441726 atacaatggttcaacatgtt 16441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 9118483 - 9118538
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttc 75  Q
    |||||| ||||||||||||| |   ||||||| |||||||||||||||||||||||    
T  9118483 gtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttc 9118538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 28901755 - 28901840
Alignment:
Q  2 gccacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||||||||  | ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||    
T  28901755 gccacgtgtcccctccgtgtcagatttcaacatgtttaactctttcatctcctctcacctccacatcatttttttttcattttcaa 28901840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 7695438 - 7695387
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatt 71  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  7695438 gtcagaattcaacatgtttaattctttcatctactctcacctccacatcatt 7695387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31335976 - 31335922
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  31335976 gtcagaattcaacatgtttaattctttcatctactctcacctccacattattttt 31335922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 56054904 - 56054958
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  56054904 gtcagaattcaacatgtttaattctttcatctactctcacctccgcatcattttt 56054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 23539086 - 23539020
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| ||||||||||||| ||||||| | | ||||||||||| |||||||||| | ||||||||||    
T  23539086 gtcagaattcaacatgtttaattctttcttgtactctcacctccgcatcattttt-tttcattttcaa 23539020  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 28447888 - 28447948
Alignment:
Q  27 ttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    ||||||||||| | || ||||||| |||||  ||| ||||||||||| |||||||||||||    
T  28447888 ttcaacatgttgatttgtttcatcacctctttccttcacatcattttcctatcattttcaa 28447948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 43201347 - 43201279
Alignment:
Q  19 tgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||    
T  43201347 tgtcagacttcaacatgtttatttgtttcatctcctctcacctccacatcaattttctttcattttcaa 43201279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 30567157 - 30567224
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||| || |||||||||    
T  30567157 gtcagaattcaacatgtttaattctttcatctactctcacctccacatcatatttttaccattttcaa 30567224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 37888388 - 37888448
Alignment:
Q  27 ttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| |||||| ||| ||||||| ||||||||| |||||||||||| || |||||||||    
T  37888388 ttcaacttgtttaattcattcatctactctcaccttcacatcatttttttaccattttcaa 37888448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 33078327 - 33078277
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcat 70  Q
    |||||| ||||||||||| | ||| ||||||| ||||||||||||||||||    
T  33078327 gtcagaattcaacatgttgaattcattcatctactctcacctccacatcat 33078277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 40300033 - 40300000
Alignment:
Q  87 atttcaacaccctcctacaatggttcaacatgtt 120  Q
    |||||||||||| |||||||||||||||||||||    
T  40300033 atttcaacacccccctacaatggttcaacatgtt 40300000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12513661 - 12513734
Alignment:
Q  1 cgccacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    ||||||||||||  | ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  12513661 cgccacgtgtcccctccgtgtcagatttcaacatgtttaattgtttcatctcctctcacctccacatcattttt 12513734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 30446798 - 30446865
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||    
T  30446798 gtcagaattcaacatgtttaattctttcatctactctcacctccacatcatttttttaccattttcaa 30446865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 12502554 - 12502624
Alignment:
Q  4 cacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    |||||||||  | ||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||    
T  12502554 cacgtgtcccctccgtgtcagatttcaacatgtttaattgtttcatctcctttcacctccacatcattttt 12502624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 7008746 - 7008813
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| |||||||| |||| ||||||||| | |||||||||||||||||||||| || |||||||||    
T  7008746 gtcagaattcaacatatttaattctttcatatgctctcacctccacatcatttttttaccattttcaa 7008813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 47700329 - 47700281
Alignment:
Q  39 acttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    ||||| |||| || ||||||||||||| |||||||||||||||||||||    
T  47700329 acttcattcaacttctctcacctccacctcatttttctatcattttcaa 47700281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 15007740 - 15007807
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    |||||| ||||||||||| | ||| ||||||| ||||||||||||||| |||||| |  |||||||||    
T  15007740 gtcagaattcaacatgttgaattcattcatctactctcacctccacattattttttttccattttcaa 15007807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 43476004 - 43476051
Alignment:
Q  27 ttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    ||||||||||||| || |||||||| ||||||| ||||||||||||||    
T  43476004 ttcaacatgtttaattatttcatctactctcacttccacatcattttt 43476051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 55027420 - 55027475
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttc 75  Q
    |||||| ||||||||||||| |   ||||||| |||||||||||||||||||||||    
T  55027420 gtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttc 55027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 46572432 - 46572325
Alignment:
Q  45 ttcatctcctctcacctccacatcatttttctatcattttcaatttcaacaccctcctacaatggttcaacatgtttagcatggctgtcaactatccctt 144  Q
    |||| |||||||| |||||||||||||||| | |||| |||||      ||||||| |  |||||||||||||||| | | ||||| ||||||||||| |    
T  46572432 ttcaactcctctctcctccacatcatttttatctcatcttcaa------caccctcttctaatggttcaacatgttgaacttggctttcaactatcccat 46572339  T
Q  145 tgcacatagtctaa 158  Q
    ||||| | ||||||    
T  46572338 tgcacttggtctaa 46572325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 46136706 - 46136646
Alignment:
Q  27 ttcaacatgtttacttctttcatctcctctcacctccacatcatttttctatcattttcaa 87  Q
    ||||||||||| | ||  |||||| |||||  ||||||||||||||| |||||||||||||    
T  46136706 ttcaacatgttgatttgcttcatcacctctttcctccacatcattttcctatcattttcaa 46136646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 3754526 - 3754419
Alignment:
Q  45 ttcatctcctctcacctccacatcatttttctatcattttcaatttcaacaccctcctacaatggttcaacatgtttagcatggctgtcaactatccctt 144  Q
    |||| |||||||| |||||||||||||||||| ||||||||||      ||||||| |  |||||||||||||||| | | ||||| ||||||||||| |    
T  3754526 ttcaactcctctctcctccacatcatttttctctcattttcaa------caccctcttctaatggttcaacatgttgaacttggctttcaactatcccat 3754433  T
Q  145 tgcacatagtctaa 158  Q
    ||||| | ||||||    
T  3754432 tgcacttggtctaa 3754419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 10265384 - 10265330
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  10265384 gtcagaattcaacatgtttaattctttcatctactctcacctccgcatcattttt 10265330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36231560 - 36231633
Alignment:
Q  1 cgccacgtgtcctttgcgtgtcagacttcaacatgtttacttctttcatctcctctcacctccacatcattttt 74  Q
    ||||||||||||  |  |||||||| ||||||||||||| || |||||||||||||||| |  |||||||||||    
T  36231560 cgccacgtgtcccctctgtgtcagatttcaacatgtttaattgtttcatctcctctcacatgtacatcattttt 36231633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 8471876 - 8471905
Alignment:
Q  45 ttcatctcctctcacctccacatcattttt 74  Q
    ||||||||||||||||||||||||||||||    
T  8471876 ttcatctcctctcacctccacatcattttt 8471905  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 12271873 - 12271818
Alignment:
Q  20 gtcagacttcaacatgtttacttctttcatctcctctcacctccacatcatttttc 75  Q
    |||||| ||||||||||||| |   ||||||| |||||||||||||||||||||||    
T  12271873 gtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttc 12271818  T

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