View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17942_low_18 (Length: 322)

Name: NF17942_low_18
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17942_low_18
NF17942_low_18
[»] chr5 (4 HSPs)
chr5 (13-180)||(37010304-37010471)
chr5 (13-171)||(37284981-37285139)
chr5 (234-303)||(40778885-40778954)
chr5 (145-181)||(10186481-10186517)
[»] chr4 (14 HSPs)
chr4 (13-180)||(46096339-46096506)
chr4 (13-180)||(53827249-53827416)
chr4 (13-181)||(21629866-21630034)
chr4 (13-180)||(20040225-20040391)
chr4 (13-84)||(46138840-46138911)
chr4 (13-78)||(2501956-2502021)
chr4 (138-180)||(2501884-2501926)
chr4 (230-303)||(13085191-13085264)
chr4 (67-125)||(13874253-13874311)
chr4 (180-240)||(19935383-19935441)
chr4 (146-180)||(31557607-31557641)
chr4 (145-178)||(29318497-29318530)
chr4 (186-222)||(7633990-7634026)
chr4 (138-182)||(10118896-10118940)
[»] chr3 (9 HSPs)
chr3 (13-182)||(35873395-35873564)
chr3 (13-180)||(52352849-52353009)
chr3 (13-164)||(48269310-48269461)
chr3 (180-222)||(8536516-8536558)
chr3 (234-303)||(5128830-5128899)
chr3 (146-180)||(34212141-34212175)
chr3 (230-268)||(45168426-45168464)
chr3 (145-182)||(43264378-43264415)
chr3 (148-180)||(10138141-10138173)
[»] chr7 (16 HSPs)
chr7 (13-180)||(47230767-47230934)
chr7 (13-175)||(39064005-39064167)
chr7 (13-180)||(25416434-25416594)
chr7 (15-181)||(5434417-5434583)
chr7 (13-180)||(9934160-9934324)
chr7 (180-240)||(4888820-4888878)
chr7 (180-222)||(1786587-1786629)
chr7 (180-240)||(30217710-30217768)
chr7 (145-180)||(17034961-17034996)
chr7 (180-222)||(6451893-6451935)
chr7 (180-222)||(11228885-11228927)
chr7 (139-177)||(39067185-39067223)
chr7 (136-182)||(41202969-41203015)
chr7 (234-303)||(4303371-4303439)
chr7 (234-303)||(13882785-13882854)
chr7 (186-222)||(8916520-8916556)
[»] chr2 (13 HSPs)
chr2 (13-177)||(29458344-29458508)
chr2 (13-180)||(43567670-43567837)
chr2 (13-180)||(7570950-7571110)
chr2 (13-180)||(16665545-16665705)
chr2 (234-303)||(27956253-27956322)
chr2 (180-215)||(4184684-4184719)
chr2 (145-180)||(22985460-22985495)
chr2 (181-219)||(18945860-18945898)
chr2 (234-303)||(33655548-33655618)
chr2 (184-218)||(36647198-36647232)
chr2 (186-215)||(1518100-1518129)
chr2 (234-303)||(27952417-27952486)
chr2 (145-178)||(37781386-37781419)
[»] chr8 (12 HSPs)
chr8 (13-182)||(4141197-4141366)
chr8 (13-180)||(28846061-28846221)
chr8 (13-180)||(10189275-10189442)
chr8 (13-159)||(12278593-12278725)
chr8 (13-156)||(916027-916158)
chr8 (230-303)||(22512145-22512218)
chr8 (233-303)||(22520898-22520968)
chr8 (145-182)||(21560320-21560357)
chr8 (234-303)||(22921949-22922018)
chr8 (234-303)||(18180782-18180851)
chr8 (145-178)||(32211716-32211749)
chr8 (234-303)||(42891763-42891832)
[»] scaffold1295 (1 HSPs)
scaffold1295 (13-182)||(1146-1315)
[»] chr1 (8 HSPs)
chr1 (13-181)||(13789352-13789513)
chr1 (13-163)||(52975101-52975251)
chr1 (13-180)||(25804630-25804790)
chr1 (13-180)||(39626386-39626553)
chr1 (22-129)||(22909573-22909681)
chr1 (180-222)||(40804534-40804576)
chr1 (237-303)||(50857543-50857609)
chr1 (235-303)||(12486325-12486392)
[»] scaffold0084 (1 HSPs)
scaffold0084 (13-181)||(14661-14829)
[»] chr6 (14 HSPs)
chr6 (13-180)||(18885486-18885653)
chr6 (13-180)||(10792240-10792407)
chr6 (13-129)||(13430356-13430472)
chr6 (180-222)||(27822269-27822311)
chr6 (127-183)||(14211776-14211832)
chr6 (180-222)||(22889166-22889208)
chr6 (146-180)||(32547836-32547870)
chr6 (180-213)||(8047518-8047551)
chr6 (180-213)||(8050021-8050054)
chr6 (181-222)||(22873720-22873761)
chr6 (185-240)||(18727010-18727062)
chr6 (148-180)||(20820297-20820329)
chr6 (234-286)||(26571071-26571123)
chr6 (255-303)||(29340905-29340953)
[»] scaffold0240 (1 HSPs)
scaffold0240 (180-222)||(1561-1603)
[»] scaffold0330 (1 HSPs)
scaffold0330 (180-216)||(17543-17579)
[»] scaffold0564 (1 HSPs)
scaffold0564 (146-180)||(4122-4156)
[»] scaffold0316 (1 HSPs)
scaffold0316 (146-180)||(3173-3207)
[»] scaffold0054 (1 HSPs)
scaffold0054 (180-222)||(10561-10603)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 37010304 - 37010471
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37010304 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtagatccaattaaaaatattgtttgggta 37010403  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37010404 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagt 37010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 37285139 - 37284981
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  37285139 aatatggtacatttaaaatattagaaacaatattatatttcaaggtggaatggataatgtggaaaaattggtggatccaattaaaaatattgcttgggta 37285040  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattat 171  Q
    || || || | |||||| ||| || ||||||||||||||||||||||||||||| ||||    
T  37285039 tgattattcgacaaattacaaacaatattttgatcaaacccgtgcaacgcacgggttat 37284981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 40778954 - 40778885
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  |||| | |||||| ||||||| ||||||||    
T  40778954 attcaataaaattattcgagattttctctcaattctggtggattccagaaacccttattttgataggttt 40778885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 10186481 - 10186517
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatatacctagtt 181  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  10186481 atcaagcccgtgcaacgcacgggttatatacctagtt 10186517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 46096339 - 46096506
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46096339 aatatggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 46096438  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46096439 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagt 46096506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 53827416 - 53827249
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  53827416 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgagta 53827317  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53827316 tgattcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagt 53827249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 21630034 - 21629866
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |||| ||||||||| |||||||||||||| |||||||    
T  21630034 aatatgatgcatttaaaatattagaaacaatattatattttaaggtaggatgaataatgtggaaaaactggtggatcaaattaaaaatattgcttgggta 21629935  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagtt 181  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  21629934 tggttcttgagcaaattgcaagcagtattttaatcaaacctgtgcaacgcacgggttatatacctagtt 21629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 20040225 - 20040391
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||| |||||||||||||||| |||||||||||||| |||||||    
T  20040225 aatatggtgcatttaaaatattagaaacaatattatatttcaagttggggtagataatgtgggaaaattggtggatcaaattaaaaatattgcttgggta 20040324  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
     |||| || |||||||||| ||| |||||||||| |||| |||||||||||||| |||||||||||||    
T  20040325 gggtt-ttaggcaaattgctagccgtattttgattaaactcgtgcaacgcacgggttatatacctagt 20040391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 46138840 - 46138911
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46138840 aatatggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattggt 46138911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 2502021 - 2501956
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaa 78  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  2502021 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaa 2501956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 2501926 - 2501884
Alignment:
Q  138 tattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  2501926 tattttgatcaaacccgtgcaacgcacgggttatatacctagt 2501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 13085264 - 13085191
Alignment:
Q  230 ttttattcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||||||| ||||||||| |||||||||||||||||| |  |||| || ||||| ||||||| ||||||||    
T  13085264 ttttattcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttattttgataggttt 13085191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 13874311 - 13874253
Alignment:
Q  67 taatgtaggaaaattggtggatccaattaaaaatattgtttgggtatggttcttgggca 125  Q
    |||||||| |||||||||||||| ||||||||||||||||||  | |||||||| ||||    
T  13874311 taatgtagtaaaattggtggatcaaattaaaaatattgtttgattctggttcttaggca 13874253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 19935383 - 19935441
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaacttctaactgttttattcaat 240  Q
    |||||||||||||| ||||||||||||||| ||||| |||||| ||||  |||||||||||    
T  19935383 tttccctatttaagtttaacagttgtaaccaaagagacaacttataac--ttttattcaat 19935441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 31557607 - 31557641
Alignment:
Q  146 tcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||| |||||||||||||    
T  31557607 tcaaacccgtgcaacgcacgggttatatacctagt 31557641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 29318497 - 29318530
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatataccta 178  Q
    ||||||||||| ||||||||||||||||||||||    
T  29318497 atcaaacccgtacaacgcacggattatataccta 29318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 7633990 - 7634026
Alignment:
Q  186 tatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  7633990 tatttaagcttaacagttgtaacataagaggaaactt 7634026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 10118896 - 10118940
Alignment:
Q  138 tattttgatcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    |||||| ||||| | |||||||||||||| |||||||||||||||    
T  10118896 tattttaatcaagctcgtgcaacgcacgggttatatacctagttt 10118940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 35873395 - 35873564
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35873395 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggta 35873494  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  35873495 tggttcttgggcaaattgcaagcagtattttgatgaaacccgtgcaacgcacgggttatatacctagttt 35873564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 52352849 - 52353009
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  52352849 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 52352948  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  52352949 tggttcatgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 52353009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 48269310 - 48269461
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||| | ||||||| |||||||||||||||||||| ||||||||    
T  48269310 aatatggtgcatttaaaatatcataaacaatattatatttcaaggtgggatgaataatgtggaaaaattgatggatccaattaaaaatattatttgggta 48269409  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcac 164  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  48269410 tggttcttaggcaaattgcaagcagtattttgattaaacccgtgcaacgcac 48269461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 8536558 - 8536516
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  8536558 tttccctatttaagcttgacagttgtagcctaagaggcaactt 8536516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 5128830 - 5128899
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  5128830 attcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggttt 5128899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 34212141 - 34212175
Alignment:
Q  146 tcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||| |||||||||||||    
T  34212141 tcaaacccgtgcaacgcacgggttatatacctagt 34212175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 45168464 - 45168426
Alignment:
Q  230 ttttattcaatgaaattattcaagattttctctcaattt 268  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  45168464 ttttattcaataaaattattcgagattttctctcaattt 45168426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 43264415 - 43264378
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  43264415 atcaaacccgtgcaacccacgggttatatacctagttt 43264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 10138173 - 10138141
Alignment:
Q  148 aaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||| |||||||||||||    
T  10138173 aaacccgtgcaacgcacgggttatatacctagt 10138141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 47230934 - 47230767
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  47230934 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtggaaaaattggtggatccaattaaaaatattgtttgggta 47230835  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  47230834 tggttcttgggcaaattgcaagcaatattttgatcaaacccgtgcaacgcacgggttatatacctagt 47230767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 39064167 - 39064005
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39064167 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggta 39064068  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatac 175  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39064067 tgattcttgggcaaattgcaagcagtattttgatcaaatccgtgcaacgcacgggttatatac 39064005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 25416594 - 25416434
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25416594 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 25416495  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  25416494 tggttcatgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 25416434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 5434417 - 5434583
Alignment:
Q  15 tatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggtatg 114  Q
    ||||||||||||||||||| | |||||||||||||||| ||  |||  |||||||||| | |||||||||||||| |||||||||||||| || ||| |     
T  5434417 tatggtgcatttaaaatatcataaacaatattatatttcaaaatggagtggataatgtggcaaaattggtggatcaaattaaaaatattggttaggtgta 5434516  T
Q  115 gttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagtt 181  Q
    |||| || | |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  5434517 gttcctgagaaaattgcaagcaatattttgatcaaaccagtgcaacgcacgggttatatacctagtt 5434583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 9934324 - 9934160
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || | |||||||||||||| |||| ||    
T  9934324 aatatggtgtagttaaaatattagaaacaatattatatttcaaggtggggtggataatgtgggaaaattggtagaacaaattaaaaatattgattggcta 9934225  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||| |||  ||||   ||| ||||||||||||||||||   |||||| |||||||||||||    
T  9934224 tggttcttggacaagctgca---agtgttttgatcaaacccgtgctttgcacgggttatatacctagt 9934160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 4888878 - 4888820
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaacttctaactgttttattcaat 240  Q
    ||||||||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  4888878 tttccctatttaagcttaacagttgtatcctaagagacaacttataac--ttttattcaat 4888820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 1786587 - 1786629
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1786587 tttccctatttaagcttaacagttgtagcctaagaggaaactt 1786629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 30217710 - 30217768
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaacttctaactgttttattcaat 240  Q
    ||||||| ||||||||||||||||||||||||| || |||||| ||||  |||||||||||    
T  30217710 tttccctgtttaagcttaacagttgtaacctaaaagacaacttataac--ttttattcaat 30217768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 17034961 - 17034996
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||||||| |||||||||||||    
T  17034961 atcaaacccgtgcaacgcacgggttatatacctagt 17034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 6451935 - 6451893
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||| ||||||||||||| |||||||| ||||||    
T  6451935 tttccctatttaaacttaacagttgtagcctaagagacaactt 6451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 11228885 - 11228927
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||| ||||| | |||||||||||||    
T  11228885 tttccctatttaagcttaacatttgtagcataagaggcaactt 11228927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 39067223 - 39067185
Alignment:
Q  139 attttgatcaaacccgtgcaacgcacggattatatacct 177  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  39067223 attttaatcaaacccgtgcaacgcacgggttatatacct 39067185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 41203015 - 41202969
Alignment:
Q  136 agtattttgatcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    |||||| | |||||| ||||||||||||||| |||||||||||||||    
T  41203015 agtattataatcaaatccgtgcaacgcacgggttatatacctagttt 41202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 4303371 - 4303439
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| |||  |||| || ||||| ||| ||||||||||||    
T  4303371 attcaataaaattattcgagattttctctcaattctagtggattccgaaaaccctta-tttaataggttt 4303439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 13882854 - 13882785
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||  |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  13882854 attcaataaaattatttgagattttctctcaattctggtggattccggaaacccttattttgataggttt 13882785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 8916556 - 8916520
Alignment:
Q  186 tatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  8916556 tatttaagcttaacagttgtaacataagaggaaactt 8916520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 29458344 - 29458508
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||||||| ||||    
T  29458344 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatggatggatcaaattaaaaatattgtttaggta 29458443  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacct 177  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  29458444 cggttcttgggcaaattgaaagcagtattttgatcaaacccgtgcaacgcacgggttatatacct 29458508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 43567670 - 43567837
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  43567670 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatgggtggatcaaattaaaaatattgtttgggta 43567769  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
     |||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||    
T  43567770 cggttcttgggtaaattgcaagcagtattttaatcaaacccgtgcaacgcactggttatatacttagt 43567837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 7571110 - 7570950
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  7571110 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 7571011  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  7571010 tggttcatgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 7570950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 16665705 - 16665545
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  16665705 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 16665606  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||| ||||||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  16665605 tggttcatgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 16665545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 27956322 - 27956253
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  27956322 attcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttcataggttt 27956253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 4184684 - 4184719
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagag 215  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4184684 tttccctatttaagcttaacagttgtagcctaagag 4184719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 22985495 - 22985460
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||||||| |||||||||||||    
T  22985495 atcaaacccgtgcaacgcacgggttatatacctagt 22985460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 18945860 - 18945898
Alignment:
Q  181 ttccctatttaagcttaacagttgtaacctaagaggcaa 219  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  18945860 ttccctatttaagcttaacagttttagcctaagaggcaa 18945898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 33655548 - 33655618
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattt-tagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| ||||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  33655548 attcaataaaattattcgagattttctctcaatttctggtggattccggaaacccttattttgataggttt 33655618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 36647198 - 36647232
Alignment:
Q  184 cctatttaagcttaacagttgtaacctaagaggca 218  Q
    |||||||||||||||||| ||||||||||||||||    
T  36647198 cctatttaagcttaacagatgtaacctaagaggca 36647232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 1518100 - 1518129
Alignment:
Q  186 tatttaagcttaacagttgtaacctaagag 215  Q
    ||||||||||||||||||||||||||||||    
T  1518100 tatttaagcttaacagttgtaacctaagag 1518129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 27952486 - 27952417
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| | ||||||    
T  27952486 attcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttcaaaggttt 27952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 37781386 - 37781419
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatataccta 178  Q
    |||||||||||||||||||||| |||||||||||    
T  37781386 atcaaacccgtgcaacgcacgggttatataccta 37781419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 4141197 - 4141366
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||    
T  4141197 aatatgatgcatttaaaatattggaaacaatattatattttaaggtaggatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggta 4141296  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  4141297 tggttcttgagcaaattgcaagcaatattttaatcaaacccgtgcaacgcacgggttatatacctagttt 4141366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 28846061 - 28846221
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28846061 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggta 28846160  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  28846161 tggttcttgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 28846221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 10189275 - 10189442
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||| |||||||||||||| |||||||    
T  10189275 aatatgatgcatttaaaatattagaaacaatattatattttaaggtatgatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggta 10189374  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||| |||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||    
T  10189375 tggttcttgagcaaattgcaagcaatattttaatcaaactcgtgcaacgcacgggttatatacctagt 10189442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 12278593 - 12278725
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||              |||| |||||||| |||||||||||||| || ||||    
T  12278593 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtggga--------------aaatgggtggatcaaattaaaaatattgcttcggta 12278678  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaa 159  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||    
T  12278679 tcgttcttgggcaaattgcaagcagtatttggatcaaacccgtgcaa 12278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 916158 - 916027
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttggg-- 110  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||              ||||||| | |||||| |||||||||||||| | | |      
T  916158 aatatggtgcatttaaaatattagaaaaaatattatatttcaaggtg--------------ggaaaatggatggatcaaattaaaaatattgctggagta 916073  T
Q  111 tatggttcttgggcaaattgcaagcagtattttgatcaaacccgtg 156  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||    
T  916072 tatgattcttgggcaaattacaagtagtattttgatcaaacccgtg 916027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 22512218 - 22512145
Alignment:
Q  230 ttttattcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  22512218 ttttattcaataaaattattcgagattttctctcaattctggtggatttcggaaacccttattttgataggttt 22512145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 22520968 - 22520898
Alignment:
Q  233 tattcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    |||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  22520968 tattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggttt 22520898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 21560357 - 21560320
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21560357 atcaaacccgtgcaacgcacgggttatatacctagttt 21560320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 22922018 - 22921949
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  22922018 attcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggttt 22921949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 18180851 - 18180782
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||| |||||||||||||||| | |  ||||  ||||||| ||||||| ||||||||    
T  18180851 attcaataaaattattcgagattttctctcaattctggtggattctggaaacccttattttgataggttt 18180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 32211716 - 32211749
Alignment:
Q  145 atcaaacccgtgcaacgcacggattatataccta 178  Q
    |||||||||||||||||||||| |||||||||||    
T  32211716 atcaaacccgtgcaacgcacgggttatataccta 32211749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 42891832 - 42891763
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||| ||||||||  |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  42891832 attcaataaaattatttgagattttctctcaattctggtggattccggaaacccttattttgataggttt 42891763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1295 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold1295
Description:

Target: scaffold1295; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 1315 - 1146
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  1315 aatatggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttgggta 1216  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagttt 182  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  1215 tggttcttgggaaaattgcaagcagtattttgatcaaacccgcgcaacgcacaggttatatacctagttt 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 13789352 - 13789513
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  13789352 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 13789451  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagtt 181  Q
    |||||| ||||||||||        ||||||||||||||||||||||||||||| ||||||||||||||    
T  13789452 tggttcatgggcaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagtt 13789513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 52975251 - 52975101
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||| ||    
T  52975251 aatatgatgcatttaaaatattaaaaacaatattatattttaaggtgggatggataatgtggaaaaattggtggatcaaattaaaaatattgcttggata 52975152  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgca 163  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  52975151 tggttcttgagcaaattgcaagcagtattttaatcaaacccgtgcaacgca 52975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 25804790 - 25804630
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25804790 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggta 25804691  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    || || |||| ||||||        ||||||||||||||||||||||||||||| |||||||||||||    
T  25804690 tgattgttggacaaatt-------atattttgatcaaacccgtgcaacgcacgggttatatacctagt 25804630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 39626386 - 39626553
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||  ||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||  ||| |||||||||||||| |||  ||    
T  39626386 aatatgggacatttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtatatctaattaaaaatattgattgaata 39626485  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||    
T  39626486 tggttcttgggtaaattgcaagcaatattttgatcaatcccgtgcaacgcacgggttatatacctagt 39626553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 22909681 - 22909573
Alignment:
Q  22 catttaaaatattagaaacaatattatattttaaggtgggatggataatgtagg-aaaattggtggatccaattaaaaatattgtttgggtatggttctt 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||| |||||  | |||||| ||||| | |||||||||||||    
T  22909681 catttaaaatattagaaacaatattatatttcaaggtgggatggttaatgtgggaaaaattgatggataaagttaaaagtattgctcgggtatggttctt 22909582  T
Q  121 gggcaaatt 129  Q
    | |||||||    
T  22909581 gcgcaaatt 22909573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 40804534 - 40804576
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  40804534 tttccttatttaagattaacagttgtagcctaagaggcaactt 40804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 50857609 - 50857543
Alignment:
Q  237 caatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    |||| ||||||||| |||||||||||||||| | |  |||| |||||||| ||||||| ||||||||    
T  50857609 caataaaattattcgagattttctctcaattctggtggattccggaaacccttattttgataggttt 50857543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 12486392 - 12486325
Alignment:
Q  235 ttcaatgaaattattcaagattttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    |||||| ||||||||| |||||||||||||||||| |  |||| || ||||| ||| ||||||||||||    
T  12486392 ttcaataaaattattcgagattttctctcaattttggtggattccgaaaaccctta-tttaataggttt 12486325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 14661 - 14829
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||| ||    
T  14661 aatatggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttggata 14760  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagtt 181  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  14761 tggttcttggaaaaattgcaagcagtattttgatcaaacccgtgcagcgcacaggttatatacctagtt 14829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 18885486 - 18885653
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||| |||||||||||||| |||  ||    
T  18885486 aatatggtacatttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtggatcaaattaaaaatattgattgaata 18885585  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||||||| |||||||||||||    
T  18885586 tggttcttgggtaaattgcaagcaatattttgatcaatcctgtgcaacgcacgggttatatacctagt 18885653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 10792240 - 10792407
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||| ||||| ||||||||||||||||||||||||| || || || ||||||||||  ||||||||||||||| ||||||||||||||||||| ||    
T  10792240 aatatggtacatttgaaatattagaaacaatattatatttcaaagttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttggata 10792339  T
Q  113 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagt 180  Q
    |||||| |||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  10792340 tggttcatgggcaaattacaagcagcattttgatcaaaccggtgcaacgcacgggttatatacctagt 10792407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 13430472 - 13430356
Alignment:
Q  13 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  13430472 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattgtttgggta 13430373  T
Q  113 tggttcttgggcaaatt 129  Q
    |||||| ||||||||||    
T  13430372 tggttcatgggcaaatt 13430356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 27822311 - 27822269
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  27822311 tttccctatttaagcttaacagttgtaacctaataggcaactt 27822269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 14211832 - 14211776
Alignment:
Q  127 attgcaagcagtattttgatcaaacccgtgcaacgcacggattatatacctagtttc 183  Q
    |||||||||| |||||| ||||||| |||||||||||||| |||||||| |||||||    
T  14211832 attgcaagcactattttaatcaaactcgtgcaacgcacgggttatatacatagtttc 14211776  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 22889166 - 22889208
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||| |||| |||| |||||||||||||||    
T  22889166 tttccctatttaagctttacagatgtagcctaagaggcaactt 22889208  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 32547836 - 32547870
Alignment:
Q  146 tcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||| |||||||||||||    
T  32547836 tcaaacccgtgcaacgcacgggttatatacctagt 32547870  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 8047551 - 8047518
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaag 213  Q
    ||||||||||||||||||||||||||| ||||||    
T  8047551 tttccctatttaagcttaacagttgtagcctaag 8047518  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 8050054 - 8050021
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaag 213  Q
    ||||||||||||||||||||||||||| ||||||    
T  8050054 tttccctatttaagcttaacagttgtagcctaag 8050021  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 22873720 - 22873761
Alignment:
Q  181 ttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||||||| |||  |||||||||||||||    
T  22873720 ttccctatttaagcttaacagatgttgcctaagaggcaactt 22873761  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 18727010 - 18727062
Alignment:
Q  185 ctatttaagcttaacagttgtaacctaagaggcaacttctaactgttttattcaat 240  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||  |||||||||||    
T  18727010 ctatttaagcttaaccgttgtaacctaagagg-aacttataac--ttttattcaat 18727062  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 20820297 - 20820329
Alignment:
Q  148 aaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||| |||||||||||||    
T  20820297 aaacccgtgcaacgcacgggttatatacctagt 20820329  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 26571071 - 26571123
Alignment:
Q  234 attcaatgaaattattcaagattttctctcaattttagcagattacggaaacc 286  Q
    ||||||| ||||||||| |||||||||||||||| |||| |||| || |||||    
T  26571071 attcaataaaattattcgagattttctctcaattctagcggattccgaaaacc 26571123  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 29340953 - 29340905
Alignment:
Q  255 ttttctctcaattttagcagattacggaaacctttattttaataggttt 303  Q
    ||||||||||||| |||  |||| |||||||||||||||| ||||||||    
T  29340953 ttttctctcaattctagtggattccggaaacctttattttgataggttt 29340905  T

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Target: scaffold0240 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 1561 - 1603
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  1561 tttccttatttaagcttaacagttgtaacctaagaggaaactt 1603  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 17543 - 17579
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagagg 216  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17543 tttccttatttaagcttaacagttgtaacctaagagg 17579  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 4122 - 4156
Alignment:
Q  146 tcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||| |||||||||||||    
T  4122 tcaaacccgtgcaacgcacgggttatatacctagt 4156  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 3207 - 3173
Alignment:
Q  146 tcaaacccgtgcaacgcacggattatatacctagt 180  Q
    ||||||||||||||||||||| |||||||||||||    
T  3207 tcaaacccgtgcaacgcacgggttatatacctagt 3173  T

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Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 10561 - 10603
Alignment:
Q  180 tttccctatttaagcttaacagttgtaacctaagaggcaactt 222  Q
    ||||||||||||||||| |||| |||| |||||||||||||||    
T  10561 tttccctatttaagctttacagatgtagcctaagaggcaactt 10603  T

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