View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_19 (Length: 316)
Name: NF17942_low_19
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 13879691 - 13879405
Alignment:
| Q |
14 |
caacaacaacaacaacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
113 |
Q |
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| T |
13879691 |
caacaacaacaacgatgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
13879592 |
T |
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| Q |
114 |
aggaaggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
213 |
Q |
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| T |
13879591 |
aggaaggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
13879492 |
T |
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| Q |
214 |
ggaagcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaagg |
300 |
Q |
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| T |
13879491 |
ggaagcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaagg |
13879405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 13875461 - 13875188
Alignment:
| Q |
27 |
aacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagaga |
126 |
Q |
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| T |
13875461 |
aacgatgactattatcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagaga |
13875362 |
T |
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| Q |
127 |
ttgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcga |
226 |
Q |
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| T |
13875361 |
ttgatgtctgtgttgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcga |
13875262 |
T |
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| Q |
227 |
ctttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaagg |
300 |
Q |
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| T |
13875261 |
cgttgttaacactaaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaagg |
13875188 |
T |
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