View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_low_2 (Length: 847)
Name: NF17942_low_2
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 12 - 830
Target Start/End: Complemental strand, 28320901 - 28320094
Alignment:
| Q |
12 |
caaagggcattattggaagaaattgtagggttgattcctaatnnnnnnngtgtaatcccttctaagtatcttcttaggttgctaagaacagctatgatat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320901 |
caaagggcattattggaagaaattgtagggttgattcctaataaaaaaagtgtaatcccttctaagtatcttcttaggttgctaagaacagctatgatat |
28320802 |
T |
|
| Q |
112 |
tacatgcaagttcatcatgcatagaaaatttggagaaaagggttggttcacagcttgatgaagttgaacttgtggatattttgataccaaatatgggata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320801 |
tacatgcaagttcatcatgcatagaaaatttggagaaaagggttggttcacagcttgatgaagttgaacttgtggatattttgataccaaatatgggata |
28320702 |
T |
|
| Q |
212 |
ttcagttgagacactttatgatatagattgtattcaaagaattattgatcattttatgtcaatgtataatcctggaacaacatcaactactccattatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320701 |
ttcagttgagacactttatgatatagattgtattcaaagaattattgatcattttatgtcaatgtataatcctggaacaacatcaactactccattatgt |
28320602 |
T |
|
| Q |
312 |
ataactggtgaaggatccttgattggtggagttgatgcattgacacctatgacaattgtggctaatttgttggatgcatatcttgctgaggtggctcttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28320601 |
ataactggtgaaggatccttgattggtggagttgatgcattgacacctatgacaattgtggctaatttgttggatgcatatcttactgaggtggctcttg |
28320502 |
T |
|
| Q |
412 |
atgttaatttgaagttgcctaagtttcaatctcttgctgcttcaattcctgattatgctaggccattggatgatggtttatatcatgctattgatgtata |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320501 |
atgttaatttgaagttgcctaagtttcaatctcttgctgcttcaattcctgattatgctaggccattggatgatggtttatatcatgctattgatgtata |
28320402 |
T |
|
| Q |
512 |
ccttaaggtgatgcttgcttacttcaattttgaagaaaattaattgaatgtaatcacatatgccgatattgtccgacatgagacatgttttcaatctgac |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
28320401 |
ccttaaggtgatgcttgcttacttcaattttgaagaaaatt-----------atcacatatgccgatattgtctgacaggagacatgttttcaatctgac |
28320313 |
T |
|
| Q |
612 |
gtgtcgctactacatatcctaacctcatttaacttgtactcatcnnnnnnnnatatgatgattctaattaatgtaagaaattttatgtcaattgtaggca |
711 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320312 |
gtgtcgctactacatatcctaacctcgtttaacttgtactcatcttttttttatatgatgattttaattaatgtaagaaattttatgtcaattgtaggca |
28320213 |
T |
|
| Q |
712 |
catccatggctaatagattctgaaagggaacaattttgtagactcatgaactgccaaaagttgtcattagaagcaagcacacatgctgcacaaaatgaac |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320212 |
catccatggctaatagattctgaaagggaacaattttgtagactcatgaactgccaaaagttgtcattagaagcaagcacacatgctgcacaaaatgaac |
28320113 |
T |
|
| Q |
812 |
gaataccactgagagtaat |
830 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
28320112 |
ggataccactgagagtaat |
28320094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 72 - 271
Target Start/End: Original strand, 5950138 - 5950337
Alignment:
| Q |
72 |
tctaagtatcttcttaggttgctaagaacagctatgatattacatgcaagttcatcatgcatagaaaatttggagaaaagggttggttcacagcttgatg |
171 |
Q |
| |
|
|||||| |||| ||| ||||||| |||| || |||||||||| ||||||| ||||||||| ||| ||||| ||||||||||| || | || || ||| |
|
|
| T |
5950138 |
tctaagcatctccttcggttgctccgaaccgcaatgatattacgtgcaagtccatcatgcaaagagaatttagagaaaagggtaggagctcaactagatc |
5950237 |
T |
|
| Q |
172 |
aagttgaacttgtggatattttgataccaaatatgggatattcagttgagacactttatgatatagattgtattcaaagaattattgatcattttatgtc |
271 |
Q |
| |
|
| | | |||||||||| || | || |||||||||||||| || || ||||| ||||||||||||||||||||||| || ||| | || ||||||||||| |
|
|
| T |
5950238 |
aggcttcacttgtggatcttctcattccaaatatgggatactcggtcgagacgctttatgatatagattgtattcagaggattctggaccattttatgtc |
5950337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 707 - 832
Target Start/End: Original strand, 5951128 - 5951253
Alignment:
| Q |
707 |
aggcacatccatggctaatagattctgaaagggaacaattttgtagactcatgaactgccaaaagttgtcattagaagcaagcacacatgctgcacaaaa |
806 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| |||||||| | || ||||| ||||| ||||||||| | ||||| |||| ||||| ||||| |||||||| |
|
|
| T |
5951128 |
aggcacatacatggctgacagattcggaacgggaacaactatgcagactaatgaattgccaaaagctatcattggaaggaagcagtcatgcagcacaaaa |
5951227 |
T |
|
| Q |
807 |
tgaacgaataccactgagagtaattg |
832 |
Q |
| |
|
|||| || | || || |||||||||| |
|
|
| T |
5951228 |
tgaaagattgcctctaagagtaattg |
5951253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University