View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_20 (Length: 309)
Name: NF17942_low_20
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 4116629 - 4116889
Alignment:
| Q |
12 |
aaaggcaaaaataaaactaatctaaatttcgtgtgactatgcttcatatcgtccacactccttatatgctgcctgatctgaataattttggttccaactt |
111 |
Q |
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| T |
4116629 |
aaaggcaaaaatgaaactaatctaaatttcgtgtgactatgcttcatatcgtgtacactcctcatatgctgcctgatttgaataattttggttccaactt |
4116728 |
T |
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| Q |
112 |
atgacagacgcacgatatactcgtgatatgtgtctctcatctcttatggtacactttacaacattgaatctcaagtgtactaaatattacctttcaatag |
211 |
Q |
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| T |
4116729 |
atcacagacgcacgatatactcgtgatatgtgcatcttatctcttatggtacactttacaacattgaatttcaagtgtactaaatatgacctttcaatag |
4116828 |
T |
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| Q |
212 |
agctgttgagctctttgtttccatcaactacgtcatttagcatgcatattattattaatta |
272 |
Q |
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| T |
4116829 |
agttgttgagctctttgtttccatcaactacgtcatttagcatgcgtattattattaatta |
4116889 |
T |
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