View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_22 (Length: 281)
Name: NF17942_low_22
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 3188705 - 3188940
Alignment:
| Q |
10 |
attatactggataggatcagttgccaaattatcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttac |
109 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3188705 |
attatattggataggatcagttgccaaattttcataaaacattagaggataaaaggaataacatatcagttacaagataattttaccttacattatttat |
3188804 |
T |
|
| Q |
110 |
atggccttaagcaagaacataaatcaaaaggtagcaaacccacttattttaaatccccaaggtcatgtatcagaattgtcataataagacattactcacc |
209 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
3188805 |
atggccttaagcaagaacatatatcaaaaggtagcaaacccacttattttaaatccccaaagtcatgcatcagaattgtcataataagacattactcacc |
3188904 |
T |
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| Q |
210 |
acactaaactcttaccttgcttctatatctctatgc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3188905 |
acactaaactcttaccttgcttctatatctctatgc |
3188940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 22635224 - 22635478
Alignment:
| Q |
10 |
attatactggataggatcagttgccaaattatcataaaacattagaggataaaaggaataa-catatcagttacaagagaattttaccttacattattta |
108 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
22635224 |
attatattggataggattagttgccaaattttcataaaacattagaggataaaaggaataaacatatcagttacaagagacttttaccttacattattta |
22635323 |
T |
|
| Q |
109 |
catggccttaagcaagaacataaatcaaaaggtagcaaacccacttattttaaatccccaaggtcatgtatcagaattgtcataataagacattactcac |
208 |
Q |
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| T |
22635324 |
tacggccttaagcaataacataaatcaaaaggtaacaaacccacttattttaaatccccaaagtcatgcatcagaattgtcataataagacattactcac |
22635423 |
T |
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| Q |
209 |
cacactaaactcttaccttgcttctatatctctatgcccattggtatatacataaa |
264 |
Q |
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||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
22635424 |
cacactaaactctta-cttgcttctatatctctatgcacaatggtatatacataaa |
22635478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 25101205 - 25101425
Alignment:
| Q |
17 |
tggataggatcagttgccaaattatcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttacatggcct |
116 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25101205 |
tggataggattagttgccaaattttcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttatatggcct |
25101304 |
T |
|
| Q |
117 |
taagcaagaacataaatcaaaaggtagcaaacccacttattttaaatccccaaggtcatgtatcagaattgtcataataagacattactcaccacactaa |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25101305 |
taagaaagaacataaatcaaaaggtagcaaacccacttaatttaaatctccaaggtcatgtatcagaattgtcataataagacattactcaccacactaa |
25101404 |
T |
|
| Q |
217 |
actcttaccttgcttctatat |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25101405 |
actcttaccttgcttctatat |
25101425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 25160298 - 25160518
Alignment:
| Q |
17 |
tggataggatcagttgccaaattatcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttacatggcct |
116 |
Q |
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|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25160298 |
tggataggattagttgccaaattttcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttatatggcct |
25160397 |
T |
|
| Q |
117 |
taagcaagaacataaatcaaaaggtagcaaacccacttattttaaatccccaaggtcatgtatcagaattgtcataataagacattactcaccacactaa |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25160398 |
taagaaagaacataaatcaaaaggtagcaaacccacttaatttaaatctccaaggtcatgtatcagaattgtcataataagacattactcaccacactaa |
25160497 |
T |
|
| Q |
217 |
actcttaccttgcttctatat |
237 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25160498 |
actcttaccttgcttctatat |
25160518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 13667285 - 13667151
Alignment:
| Q |
35 |
aaattatcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttacatggccttaagcaagaacataaatc |
134 |
Q |
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||||| ||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13667285 |
aaattttcatataactttagaggataaaagaaataacatatcagttacaagaaaattttaccttacattatttatatggccttaagcaagaacataaatc |
13667186 |
T |
|
| Q |
135 |
aaaaggtagcaaacccacttattttaaatccccaa |
169 |
Q |
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||||||||||||||||||||| |||||||| |||| |
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| T |
13667185 |
aaaaggtagcaaacccacttaatttaaatctccaa |
13667151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 13680142 - 13680008
Alignment:
| Q |
35 |
aaattatcataaaacattagaggataaaaggaataacatatcagttacaagagaattttaccttacattatttacatggccttaagcaagaacataaatc |
134 |
Q |
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||||| ||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13680142 |
aaattttcatataactttagaggataaaagaaataacatatcagttacaagaaaattttaccttacattatttatatggccttaagcaagaacataaatc |
13680043 |
T |
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| Q |
135 |
aaaaggtagcaaacccacttattttaaatccccaa |
169 |
Q |
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|
||||||||||||||||||||| |||||||| |||| |
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| T |
13680042 |
aaaaggtagcaaacccacttaatttaaatctccaa |
13680008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 13653346 - 13653260
Alignment:
| Q |
171 |
gtcatgtatcagaattgtcataataagacattactcaccacactaaactcttaccttgcttctatatctctatgcccattggtatata |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| || |||||||| |
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| T |
13653346 |
gtcatgtatcagaattgtcataataagacattactcaccacact-aactcttaccttgcttttgtatctctatgcacaggggtatata |
13653260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 13661471 - 13661385
Alignment:
| Q |
171 |
gtcatgtatcagaattgtcataataagacattactcaccacactaaactcttaccttgcttctatatctctatgcccattggtatata |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| || |||||||| |
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| T |
13661471 |
gtcatgtatcagaattgtcataataagacattactcaccacact-aactcttaccttgcttttgtatctctatgcacaggggtatata |
13661385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 25922327 - 25922230
Alignment:
| Q |
146 |
aacccacttattttaaatccccaaggtcatgtatcagaattgtcataataagacattactcaccacactaaactcttaccttgcttctatatctctat |
243 |
Q |
| |
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|||| ||||| ||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
25922327 |
aaccgacttaatttaaatcctcaaggtcatgcatcagaattgtcaaaataaaacattactcaccacactaaacttataccttgcttgtatatctctat |
25922230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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