View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_23 (Length: 269)
Name: NF17942_low_23
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 10307619 - 10307376
Alignment:
| Q |
10 |
gcataggtacattgtgcctttcctttgaatgattgtcggctgtcagacacatcacagtgcccgacactggcacggcaccgacacatgtgactacatttaa |
109 |
Q |
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| T |
10307619 |
gcataggtacattgtgcctttcctttgaatgattgtcggctgtcagacacatcacagtgcccgacactggcacgacaccgacacatgtgactacattcaa |
10307520 |
T |
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| Q |
110 |
caagttcactttcttaaattattatcggagtcaatgtgtcagtgtcgtgtctggtattcgtgcctgtgtcagtacttcacatcgtgaaatcaatgtgtaa |
209 |
Q |
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| T |
10307519 |
caagttcactttcttaaattattatcggagtcaatgtgtcagtgtcgtgtctggtattcgtgcctgtgtcagtacttcacattgtgaaatcaatgtgtaa |
10307420 |
T |
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| Q |
210 |
ctctaattagcatcatttgaaaaacttaaaccatacctgatttt |
253 |
Q |
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| T |
10307419 |
ttctaattagcatcatttgaaaaacttaaaccatacctgatttt |
10307376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 7282324 - 7282290
Alignment:
| Q |
125 |
aaattattatcggagtcaatgtgtcagtgtcgtgt |
159 |
Q |
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| T |
7282324 |
aaattattatcggtgtcaatgtgtcagtgtcgtgt |
7282290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 20974791 - 20974732
Alignment:
| Q |
101 |
tacatttaacaagttcactttcttaaattattatcggagtcaatgtgtcagtgtcgtgtc |
160 |
Q |
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| T |
20974791 |
tacatttaataattccaatttcttaaattattatcagtgtcaatgtgtcagtatcgtgtc |
20974732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 31924448 - 31924403
Alignment:
| Q |
119 |
tttcttaaattattatcggagtcaatgtgtcagtgtcgtgtctggt |
164 |
Q |
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| T |
31924448 |
tttcttaaattattatcggtgtcaacgtgtcaatttcgtgtctggt |
31924403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 29970586 - 29970627
Alignment:
| Q |
119 |
tttcttaaattattatcggagtcaatgtgtcagtgtcgtgtc |
160 |
Q |
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| T |
29970586 |
tttctcaaattattagcggtgtcaatgtgtcagtgtcgtgtc |
29970627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 19637824 - 19637760
Alignment:
| Q |
85 |
caccgacacatgtgactacatttaacaagttcactttcttaaattattatcggagtcaatgtgtc |
149 |
Q |
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| T |
19637824 |
caccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc |
19637760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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