View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_24 (Length: 265)
Name: NF17942_low_24
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9525912 - 9525667
Alignment:
| Q |
1 |
cttagcaaattccggtacacaccacttctatccactccacagtgcatgaaaatgtcggatagaaacttattacaaaagcttgatactcaacttcaaaaat |
100 |
Q |
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| T |
9525912 |
cttagcaaattccgatacacaccacttctatccactccaca----------------gatagaaacttattacaaaagcttgatactcaacttcaaaaat |
9525829 |
T |
|
| Q |
101 |
ttctagaaatgtttatagtttgatatataacttaattttattctgattattattaaggggtccttgaacagaataagagaggtctcagggggaaccaata |
200 |
Q |
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| T |
9525828 |
atctagaaatgtttatagtttgatatataacttaattttaatctgattattattaaggggtccttgaacagaataagagaggtctcagggggaaccaata |
9525729 |
T |
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| Q |
201 |
cccttcttaatgagcatatcatacgccctatcaattttcatggtatccatattcttggacat |
262 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
9525728 |
cccttcttaatgagcatatcatacaccctgtcaattttcatggtatccatattcttgaacat |
9525667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 9498759 - 9498674
Alignment:
| Q |
177 |
gagaggtctcagggggaaccaatacccttcttaatgagcatatcatacgccctatcaattttcatggtatccatattcttggacat |
262 |
Q |
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| T |
9498759 |
gagaggtctcagggtgagccaattcccttcttaatgagcatatcatacaccctgtcaattttgatggtatccatattcttgaacat |
9498674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 36872127 - 36872391
Alignment:
| Q |
7 |
aaattccggtacacaccacttctatccactccacagtgcatgaaaa-tgtcggatagaaacttattacaaaagcttgatactcaacttcaaaaatttcta |
105 |
Q |
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| T |
36872127 |
aaatttcggtacacaccacttctctccactccatagtgcatgaaaaatgtcggatagaaacttattacaaaagcttgatacaacacttcaaaaatttcta |
36872226 |
T |
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| Q |
106 |
gaaatgtttatagtttgatatataacttaattttattctgattattattaaggggtccttgaac--------agaataagagaggtctcagggggaacca |
197 |
Q |
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| T |
36872227 |
gaaatgtttatagtttgatatataacttaattttattctgattattattaaggggtccttgaactaaataatagattaagagaggtctcagggggaacca |
36872326 |
T |
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| Q |
198 |
atacccttcttaatgagcatatcatacgccctatcaattttcatggtatccatattcttggacat |
262 |
Q |
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|| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
36872327 |
atgcccttcttaatgagcatatcatacaccctgtcaattttcatggtatccatattcttgaacat |
36872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 36874158 - 36873906
Alignment:
| Q |
7 |
aaattccggtacacaccacttctatccactccacagtgcatgaaaa-tgtcggatagaaacttattacaaaagcttgatactcaacttcaaaaatttcta |
105 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36874158 |
aaatttcggtacacaccacttctgtccactccacagtgcatgaaaaatgtcagatagaaacttattacaaaagcttgatacaacacttcaaaaatttctg |
36874059 |
T |
|
| Q |
106 |
gaaatgtttatagtttgatatataacttaattttattctgattattattaaggggtccttg--------aacagaataagagaggtctcagggggaacca |
197 |
Q |
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| T |
36874058 |
gaaatgtttatagtttgatatataacttaattttattctgattattattaaggggtccttgatcaaaataatagattaagagaggtctcagggggaacga |
36873959 |
T |
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| Q |
198 |
atacccttcttaatgagcatatcatacgccctatcaattttcatggtatccat |
250 |
Q |
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||||||||| ||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
36873958 |
atacccttcataatgagcatatcatgcaccctgtcaattttcatggtatccat |
36873906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 23043524 - 23043591
Alignment:
| Q |
183 |
tctcagggggaaccaatacccttcttaatgagcatatcatacgccctatcaattttcatggtatccat |
250 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| || | |||| ||||||||||||||| |
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| T |
23043524 |
tctcagggtgaaccaaatcccttcttaatgagcatatcataaaccatgtcaactttcatggtatccat |
23043591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 23043458 - 23043523
Alignment:
| Q |
96 |
aaaatttctagaaatgtttatagtttgatatataacttaattttattctgattattattaaggggt |
161 |
Q |
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| T |
23043458 |
aaaatttctagaattgtttatagtttgaactataactagattttattttgattataattatggggt |
23043523 |
T |
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