View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17942_low_25 (Length: 260)
Name: NF17942_low_25
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 3081301 - 3081534
Alignment:
| Q |
19 |
gtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcatcatcaaaagctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3081301 |
gtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcaacatcaaaagctt |
3081400 |
T |
|
| Q |
119 |
ccaatgatccttctgtcaatgaagtaacagtaacaaatattttacc----taggtagtggatataacatggtaaataatttggactc-aatttcctatat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
3081401 |
ccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtaggtagtggatataacatggtaaataatttggactcaaatttcc--tat |
3081498 |
T |
|
| Q |
214 |
tattgaaattttctaaaatcacttcagtaagttcat |
249 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
3081499 |
tatcgaaatttcttaaagtcacttcagtaagttcat |
3081534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 3095738 - 3095899
Alignment:
| Q |
19 |
gtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcatcatcaaaagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||| |||| ||||||| |
|
|
| T |
3095738 |
gtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtaactgatgatcaatcaacatctaaagctt |
3095837 |
T |
|
| Q |
119 |
ccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatataa |
180 |
Q |
| |
|
|||| ||||||||||| |||||||| ||| || ||||| |||| ||||||||| |||||||| |
|
|
| T |
3095838 |
ccaaagatccttctgttaatgaagttacaatatcaaatgtttttcctaggtaggggatataa |
3095899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 4547190 - 4547122
Alignment:
| Q |
22 |
atgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagta |
90 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4547190 |
atgctggcaagtgacacaatagcacttcccaatcctaaacatcctgcattttcagttggaagaaaagta |
4547122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 4547117 - 4547060
Alignment:
| Q |
122 |
atgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatata |
179 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||| ||||||||| ||||||| |
|
|
| T |
4547117 |
atgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatata |
4547060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University