View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17942_low_28 (Length: 254)

Name: NF17942_low_28
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17942_low_28
NF17942_low_28
[»] chr2 (5 HSPs)
chr2 (19-158)||(17364649-17364788)
chr2 (20-137)||(7505031-7505151)
chr2 (48-137)||(26973390-26973482)
chr2 (20-135)||(26968864-26968982)
chr2 (195-250)||(17364593-17364648)
[»] chr4 (2 HSPs)
chr4 (20-186)||(22462387-22462555)
chr4 (20-137)||(14059005-14059125)
[»] chr8 (2 HSPs)
chr8 (20-137)||(38643689-38643809)
chr8 (20-137)||(8263442-8263558)
[»] chr3 (3 HSPs)
chr3 (46-187)||(42872038-42872182)
chr3 (20-137)||(53726767-53726883)
chr3 (20-73)||(53731312-53731365)
[»] chr1 (3 HSPs)
chr1 (20-137)||(19033707-19033827)
chr1 (20-142)||(38968507-38968631)
chr1 (123-186)||(38968639-38968702)
[»] chr7 (1 HSPs)
chr7 (20-137)||(47204887-47205007)
[»] chr5 (4 HSPs)
chr5 (24-175)||(3640902-3641052)
chr5 (20-118)||(16085169-16085270)
chr5 (58-137)||(16088073-16088155)
chr5 (49-142)||(3627822-3627914)
[»] chr6 (1 HSPs)
chr6 (20-137)||(19229598-19229714)
[»] scaffold0427 (1 HSPs)
scaffold0427 (20-142)||(5755-5879)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 17364788 - 17364649
Alignment:
Q  19 aaggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgtgcagaatctggtt 118  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17364788 aaggcggataaatttcaagtatggtcctcgtgatgcttcagtttaataccaacgtttccaattttgcaagtttactttctagttcgtgcagaatctggtt 17364689  T
Q  119 cgtggttatttgaagttgcagttgatgtttgcgttcaaat 158  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  17364688 cgttgttatttgaagttgcagttgatgtttacgttcaaat 17364649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 7505151 - 7505031
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||||||| |  ||| ||||||| |||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||    
T  7505151 aggcggataaatttcaaggacagtcttcgtgacacctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctgg 7505052  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  7505051 ttcggtgttatttgaagttgc 7505031  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 26973482 - 26973390
Alignment:
Q  48 gtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctggttcgtggttatttgaagttgc 137  Q
    |||||||||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||||||  |||||||||||||||    
T  26973482 gtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgc 26973390  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 26968982 - 26968864
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||   |||||||||||| ||||||||||||||| |   |||||||| |||    
T  26968982 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacacattcaattttgcaggtttactttctagtttgttttgcagaatatgg 26968883  T
Q  117 ttcgtggttatttgaagtt 135  Q
    ||||  |||||||||||||    
T  26968882 ttcggtgttatttgaagtt 26968864  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 17364648 - 17364593
Alignment:
Q  195 tttctatcaaatgaaaaagagaaacgctaacaagtctcttctcattcatctcactc 250  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  17364648 tttccatcaaatgaaaaagagaaacgctaacaagcctcttctcattcctttcactc 17364593  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 22462387 - 22462555
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||  |  ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||   || |||||||||    
T  22462387 aggcggataaattccaaagacagtcctcgtgacgcctcatgttaatactaacgtattcaattttacaagtttactttctggttcgtcttgtagaatctgg 22462486  T
Q  117 ttcgtggttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcatcaggtacaaca 186  Q
    ||| | |||||||||||||||  | | ||||||| ||||||||||||||||| |||||| ||||||||||    
T  22462487 ttcattgttatttgaagttgcgatcgttgtttgcattcaaatcaatattaccaacgcat-aggtacaaca 22462555  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 14059005 - 14059125
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| ||||  |||||||||||| ||||||||| ||||| |   ||||||||||||    
T  14059005 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttgtagtttgttttgcagaatctgg 14059104  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||| |||||||||||||||    
T  14059105 ttcgttgttatttgaagttgc 14059125  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 38643809 - 38643689
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||| |   ||||||||||||    
T  38643809 aggcggataaatttcaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaattttgcaggtttactttctagtttgttttgcagaatctgg 38643710  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  38643709 ttcggtgttatttgaagttgc 38643689  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 8263442 - 8263558
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||     ||||| || ||||||||||||||| |   ||||||||||||    
T  8263442 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----gattttacatgtttactttctagtttgttttgcagaatctgg 8263537  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  8263538 ttcggtgttatttgaagttgc 8263558  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 42872038 - 42872182
Alignment:
Q  46 tcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagt---tcgtgcagaatctggttcgtggttatttgaagttgcagttg 142  Q
    |||||||||||||||||||||| ||||| ||||||||| || |||||||||||| |   ||  | ||||||||||| || ||| | || ||||||| |||    
T  42872038 tcgtgacgcctcaggttaatactaacgtattcaattttacaggtttactttctaatttatctcgtagaatctggtttgttgttctctgcagttgcaattg 42872137  T
Q  143 atgtttgcgttcaaatcaatattaccgacgcatcaggtacaacaa 187  Q
     ||||||||||||||||||||||| | ||  ||||||||||||||    
T  42872138 ttgtttgcgttcaaatcaatattatcaacatatcaggtacaacaa 42872182  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 53726883 - 53726767
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||    |||||| || ||||| ||||||||| |   ||||||||| ||    
T  53726883 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----aattttacaggtttaatttctagtttgttttgcagaatcagg 53726788  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    |||   |||||||||||||||    
T  53726787 ttccgtgttatttgaagttgc 53726767  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 53731365 - 53731312
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgt 73  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||    
T  53731365 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt 53731312  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 19033827 - 19033707
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||| |   ||||||||||||    
T  19033827 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactgtctagtttgttttgcagaatctgg 19033728  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||| |||| | ||||||||    
T  19033727 ttcgttgttactcgaagttgc 19033707  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 38968507 - 38968631
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagt---tcgtgcagaatctgg 116  Q
    |||||||||||||| ||| |  ||| |||||||||||||||||||||| ||| | ||||| |||||| ||||||||||||||   || ||||||||| ||    
T  38968507 aggcggataaattttaaggacagtcttcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatccgg 38968605  T
Q  117 ttcgtggttatttgaagttgcagttg 142  Q
    ||||| ||||||||||||||| ||||    
T  38968606 ttcgttgttatttgaagttgcggttg 38968631  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 38968639 - 38968702
Alignment:
Q  123 gttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcatcaggtacaaca 186  Q
    ||||||||||||||| |||| ||||  |||||||||||||||||| | ||||||||||||||||    
T  38968639 gttatttgaagttgctgttgctgttatcgttcaaatcaatattactgtcgcatcaggtacaaca 38968702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 47204887 - 47205007
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    |||||||||||||  ||| |  ||| |||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||| |   |||||||||||     
T  47204887 aggcggataaattctaaggacagtcttcgtgacgcctcaggttaatactaacgtattcaattttgcagatttactttctagtttgttttgcagaatctga 47204986  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  47204987 ttcgatgttatttgaagttgc 47205007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 3640902 - 3641052
Alignment:
Q  24 ggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttc--gtgcagaatctggttcgt 121  Q
    ||||||||| |||| |  |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||  ||||   | |  ||||| ||||||    
T  3640902 ggataaattccaaggacagtcctcgtgacgcctcaggttaatactaacgtgttcaatcttgcaggtttactttccggttcatcttccaaatctagttcgt 3641001  T
Q  122 ggttatttgaagttgcagttgatgtttgcgttcaaatcaatattaccgacgcat 175  Q
     ||| ||||||||||| |||| | |   ||| ||||||||||||||||||||||    
T  3641002 tgttgtttgaagttgcggttgctat---cgtacaaatcaatattaccgacgcat 3641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 16085270 - 16085169
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| ||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||||| |   ||||||||||||    
T  16085270 aggcggataaattccaaggacagtcttcgtgacgcctgaggttaatactaacgtgttcaatgttgcaggtttactttctagtttgttttgcagaatctgg 16085171  T
Q  117 tt 118  Q
    ||    
T  16085170 tt 16085169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 16088155 - 16088073
Alignment:
Q  58 aggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctggttcgtggttatttgaagttgc 137  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||| |   |||||||||||||| || |||| | ||||||||    
T  16088155 aggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgc 16088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 3627914 - 3627822
Alignment:
Q  49 tgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgt---gcagaatctggttcgtggttatttgaagttgcagttg 142  Q
    |||||||||| |||||||| |||||     ||||| || ||||||||||||||| ||   ||||||| |||||||| ||||||||||||||| ||||    
T  3627914 tgacgcctcaagttaatactaacgtg----attttacaggtttactttctagtttgttttgcagaatttggttcgttgttatttgaagttgcggttg 3627822  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 19229714 - 19229598
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcg---tgcagaatctgg 116  Q
    ||||||||||||| |||| |  ||| |||||||||||||||||||||| |||||     ||||| || ||||||||||||||| |   ||||||||||||    
T  19229714 aggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----gattttacaggtttactttctagtttgttttgcagaatctgg 19229619  T
Q  117 ttcgtggttatttgaagttgc 137  Q
    ||||  |||||||||||||||    
T  19229618 ttcggtgttatttgaagttgc 19229598  T

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Target: scaffold0427 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 5755 - 5879
Alignment:
Q  20 aggcggataaatttcaagtatggtcctcgtgacgcctcaggttaataccaacgttttcaattttgcaagtttactttctagttcgt---gcagaatctgg 116  Q
    ||||||||||||| |||  |  ||| |||||||||||||||||||| | | |  ||| ||||||||| ||||| ||||||||| ||   ||||||||| |    
T  5755 aggcggataaattccaatgacagtcttcgtgacgcctcaggttaatgctatccattt-aattttgcaggtttaatttctagtttgttttgcagaatctag 5853  T
Q  117 ttcgtggttatttgaagttgcagttg 142  Q
    ||||| ||||||||||||||| ||||    
T  5854 ttcgttgttatttgaagttgcggttg 5879  T

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