View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17942_low_29 (Length: 250)

Name: NF17942_low_29
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17942_low_29
NF17942_low_29
[»] chr7 (30 HSPs)
chr7 (15-250)||(766189-766424)
chr7 (178-250)||(3381273-3381345)
chr7 (178-250)||(28979713-28979785)
chr7 (178-250)||(28979864-28979936)
chr7 (178-250)||(41048235-41048307)
chr7 (178-250)||(48270099-48270171)
chr7 (178-236)||(46862886-46862944)
chr7 (178-243)||(42682256-42682321)
chr7 (178-243)||(46863037-46863102)
chr7 (178-243)||(48316017-48316082)
chr7 (178-250)||(21187978-21188050)
chr7 (178-250)||(21188132-21188204)
chr7 (178-234)||(34140325-34140381)
chr7 (178-250)||(42682400-42682472)
chr7 (178-250)||(43686493-43686565)
chr7 (178-250)||(48315866-48315938)
chr7 (178-243)||(28115235-28115300)
chr7 (178-243)||(41048091-41048156)
chr7 (178-243)||(48269955-48270020)
chr7 (178-250)||(21650013-21650085)
chr7 (178-250)||(45363924-45363996)
chr7 (178-250)||(36394483-36394556)
chr7 (178-235)||(36394635-36394692)
chr7 (178-250)||(9367415-9367487)
chr7 (178-250)||(13916453-13916525)
chr7 (178-250)||(20564410-20564482)
chr7 (186-250)||(28115092-28115156)
chr7 (178-250)||(34140159-34140231)
chr7 (132-174)||(11608369-11608411)
chr7 (178-250)||(43686636-43686708)
[»] chr1 (32 HSPs)
chr1 (178-250)||(14773180-14773252)
chr1 (178-250)||(24364413-24364485)
chr1 (178-250)||(13147795-13147867)
chr1 (178-248)||(16098576-16098646)
chr1 (178-250)||(13972368-13972440)
chr1 (178-250)||(36909004-36909076)
chr1 (178-250)||(49396146-49396218)
chr1 (180-250)||(6435214-6435284)
chr1 (178-243)||(6435070-6435135)
chr1 (178-243)||(41779992-41780057)
chr1 (178-243)||(42572467-42572532)
chr1 (185-250)||(49927064-49927129)
chr1 (178-234)||(14174452-14174508)
chr1 (178-250)||(49427004-49427076)
chr1 (178-248)||(29709010-29709080)
chr1 (188-250)||(31452346-31452408)
chr1 (178-243)||(4208702-4208767)
chr1 (178-243)||(14174603-14174668)
chr1 (178-243)||(29435273-29435338)
chr1 (178-243)||(35526725-35526790)
chr1 (178-243)||(49395902-49395967)
chr1 (178-243)||(49396002-49396067)
chr1 (178-250)||(19159935-19160007)
chr1 (178-250)||(27487371-27487443)
chr1 (178-250)||(44597153-44597225)
chr1 (180-250)||(41780135-41780204)
chr1 (178-243)||(36908860-36908925)
chr1 (178-250)||(13635807-13635879)
chr1 (178-250)||(29762902-29762974)
chr1 (178-250)||(49927208-49927280)
chr1 (188-250)||(19263112-19263174)
chr1 (178-243)||(26636918-26636983)
[»] scaffold0181 (1 HSPs)
scaffold0181 (178-250)||(24406-24478)
[»] chr2 (33 HSPs)
chr2 (178-250)||(31992584-31992656)
chr2 (179-250)||(31992402-31992473)
chr2 (178-240)||(15892279-15892341)
chr2 (178-250)||(10365324-10365396)
chr2 (178-250)||(2648569-2648641)
chr2 (178-250)||(2920049-2920121)
chr2 (178-250)||(16580945-16581017)
chr2 (178-250)||(19472318-19472390)
chr2 (178-250)||(24512634-24512706)
chr2 (178-250)||(35491082-35491154)
chr2 (178-243)||(2920199-2920264)
chr2 (181-250)||(24512483-24512552)
chr2 (178-243)||(43491423-43491488)
chr2 (178-250)||(16580794-16580866)
chr2 (186-250)||(26858621-26858685)
chr2 (178-250)||(41499768-41499840)
chr2 (178-250)||(41499918-41499990)
chr2 (112-174)||(12496239-12496301)
chr2 (178-236)||(19472468-19472526)
chr2 (178-243)||(26858478-26858543)
chr2 (178-243)||(40679305-40679370)
chr2 (178-250)||(3941199-3941271)
chr2 (178-218)||(15892436-15892476)
chr2 (178-250)||(28472399-28472471)
chr2 (179-243)||(35490938-35491002)
chr2 (178-248)||(34638445-34638515)
chr2 (178-250)||(2648417-2648490)
chr2 (178-250)||(17424442-17424514)
chr2 (188-236)||(28747418-28747466)
chr2 (178-250)||(39800348-39800420)
chr2 (178-250)||(43982509-43982581)
chr2 (178-223)||(10365475-10365520)
chr2 (178-250)||(29067352-29067424)
[»] chr8 (20 HSPs)
chr8 (112-170)||(31014145-31014203)
chr8 (178-250)||(3589714-3589786)
chr8 (178-250)||(31172426-31172498)
chr8 (178-250)||(3589891-3589963)
chr8 (178-250)||(37780095-37780167)
chr8 (178-250)||(41857665-41857737)
chr8 (178-250)||(15032838-15032910)
chr8 (178-250)||(18440985-18441057)
chr8 (178-250)||(37779944-37780016)
chr8 (178-250)||(40701079-40701151)
chr8 (178-236)||(42602920-42602978)
chr8 (178-243)||(18441136-18441201)
chr8 (178-250)||(41857816-41857888)
chr8 (178-250)||(42602755-42602827)
chr8 (178-243)||(38872046-38872112)
chr8 (178-250)||(485741-485813)
chr8 (178-250)||(22547751-22547823)
chr8 (178-250)||(26451787-26451859)
chr8 (178-250)||(41274898-41274970)
chr8 (178-250)||(24860828-24860902)
[»] chr4 (33 HSPs)
chr4 (179-248)||(23950193-23950262)
chr4 (178-250)||(958151-958223)
chr4 (178-242)||(11287800-11287864)
chr4 (178-250)||(34154122-34154194)
chr4 (178-243)||(243040-243105)
chr4 (178-243)||(49426606-49426671)
chr4 (178-250)||(6283018-6283090)
chr4 (178-250)||(6283169-6283241)
chr4 (178-250)||(17291472-17291544)
chr4 (178-250)||(37865546-37865618)
chr4 (178-250)||(44560874-44560946)
chr4 (178-234)||(49426455-49426511)
chr4 (180-236)||(51428884-51428940)
chr4 (178-248)||(44561024-44561094)
chr4 (178-243)||(958302-958367)
chr4 (178-243)||(29700006-29700071)
chr4 (178-243)||(42885762-42885827)
chr4 (178-243)||(51429032-51429097)
chr4 (178-250)||(1042241-1042313)
chr4 (178-250)||(21017694-21017766)
chr4 (188-236)||(25143748-25143796)
chr4 (178-250)||(28081775-28081847)
chr4 (178-250)||(39588381-39588453)
chr4 (178-250)||(40354291-40354363)
chr4 (178-250)||(56138559-56138631)
chr4 (178-250)||(6177801-6177873)
chr4 (178-250)||(13181809-13181881)
chr4 (178-250)||(34153972-34154043)
chr4 (178-250)||(41795047-41795119)
chr4 (178-250)||(49094394-49094466)
chr4 (178-250)||(55794232-55794304)
chr4 (178-250)||(4786039-4786111)
chr4 (178-250)||(34530479-34530551)
[»] chr6 (15 HSPs)
chr6 (180-250)||(14114526-14114596)
chr6 (178-250)||(17596154-17596226)
chr6 (178-250)||(30258005-30258077)
chr6 (178-250)||(30765602-30765674)
chr6 (178-250)||(34634637-34634709)
chr6 (178-235)||(17596525-17596582)
chr6 (178-250)||(13401823-13401895)
chr6 (178-250)||(13401974-13402047)
chr6 (178-243)||(34634493-34634558)
chr6 (178-250)||(6205137-6205209)
chr6 (178-250)||(11692104-11692176)
chr6 (188-240)||(21865358-21865410)
chr6 (178-250)||(22305424-22305496)
chr6 (178-250)||(27639835-27639907)
chr6 (178-243)||(32034088-32034153)
[»] chr3 (40 HSPs)
chr3 (178-236)||(19453894-19453952)
chr3 (178-235)||(2427965-2428022)
chr3 (178-250)||(13896560-13896632)
chr3 (180-248)||(20378454-20378522)
chr3 (178-250)||(43569377-43569449)
chr3 (178-250)||(52570102-52570174)
chr3 (178-243)||(19454047-19454112)
chr3 (185-250)||(24702969-24703034)
chr3 (178-250)||(34647914-34647986)
chr3 (178-250)||(34693967-34694039)
chr3 (178-250)||(36134640-36134712)
chr3 (178-250)||(41803295-41803367)
chr3 (178-250)||(41803446-41803518)
chr3 (182-250)||(43569226-43569294)
chr3 (178-250)||(45101156-45101228)
chr3 (178-250)||(46347415-46347487)
chr3 (178-250)||(49219339-49219411)
chr3 (178-236)||(7245564-7245622)
chr3 (178-236)||(52570253-52570311)
chr3 (178-243)||(7245407-7245472)
chr3 (178-250)||(2647391-2647463)
chr3 (178-250)||(34694117-34694189)
chr3 (178-250)||(43476510-43476582)
chr3 (178-250)||(51401952-51402024)
chr3 (178-250)||(55207347-55207419)
chr3 (178-250)||(55385456-55385528)
chr3 (178-226)||(20366556-20366604)
chr3 (178-250)||(24703113-24703185)
chr3 (178-250)||(34049390-34049462)
chr3 (178-250)||(46402666-46402738)
chr3 (178-250)||(49140538-49140610)
chr3 (178-250)||(49609679-49609751)
chr3 (188-236)||(50343235-50343283)
chr3 (178-250)||(54390105-54390177)
chr3 (197-248)||(18436974-18437025)
chr3 (180-226)||(46347268-46347314)
chr3 (178-226)||(2269008-2269056)
chr3 (178-218)||(45101307-45101347)
chr3 (178-250)||(51402105-51402177)
chr3 (178-250)||(51696279-51696351)
[»] chr5 (28 HSPs)
chr5 (178-250)||(542335-542407)
chr5 (178-250)||(3600784-3600856)
chr5 (178-250)||(18307549-18307621)
chr5 (178-250)||(18307700-18307772)
chr5 (178-250)||(25497837-25497909)
chr5 (178-250)||(35564712-35564784)
chr5 (178-250)||(42865498-42865570)
chr5 (178-243)||(3600640-3600705)
chr5 (178-243)||(35564569-35564634)
chr5 (178-250)||(11346324-11346396)
chr5 (178-250)||(13131700-13131772)
chr5 (178-250)||(42865345-42865417)
chr5 (180-243)||(20192638-20192701)
chr5 (178-248)||(35928491-35928561)
chr5 (178-250)||(1400996-1401068)
chr5 (178-250)||(8537482-8537554)
chr5 (188-240)||(17195808-17195860)
chr5 (178-250)||(27661895-27661967)
chr5 (178-250)||(28880632-28880704)
chr5 (178-250)||(30709215-30709287)
chr5 (178-243)||(1401147-1401212)
chr5 (178-250)||(542487-542559)
chr5 (190-250)||(20192782-20192842)
chr5 (188-234)||(21290314-21290360)
chr5 (178-243)||(25497692-25497758)
chr5 (182-250)||(8576663-8576731)
chr5 (178-250)||(11027400-11027472)
chr5 (178-250)||(19037161-19037233)
[»] scaffold0176 (2 HSPs)
scaffold0176 (178-234)||(1250-1306)
scaffold0176 (178-250)||(1084-1156)
[»] scaffold0192 (1 HSPs)
scaffold0192 (178-236)||(18582-18640)
[»] scaffold0101 (1 HSPs)
scaffold0101 (178-250)||(36219-36291)
[»] scaffold0199 (1 HSPs)
scaffold0199 (178-241)||(11778-11841)
[»] scaffold0025 (1 HSPs)
scaffold0025 (188-236)||(153890-153938)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 766189 - 766424
Alignment:
Q  15 tctctttagttatttcttgttttcatttggttcctattgaaaatttgactatccattcaatgaaagatattagaggcctaatcgatgaagcttactaatg 114  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||    
T  766189 tctctttagttatttcttgttttcatttggttcctattaaaaaattgactatccattcaatgaaagacattagaggcctaaccgatgaagcttactgatg 766288  T
Q  115 actaaatttggcaacaacatcaaattgtttttaagtaataaagtgataagtaagatcgtcaccacataaacatcatgcaaacattttaattaaattaatc 214  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  766289 actaaatttgacaacaacatcaaattatttttaagtaataaagtgataagtaagatcgtcaccacataaacatcatgcaaacattttaattaaattaatc 766388  T
Q  215 aactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  766389 aactgacatctactctaaaaataaattatcacatgt 766424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 3381273 - 3381345
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||    
T  3381273 acataaacatcacgcaaacattttaataaaattaatcaacttacatctactctaaaaatgaattataacatgt 3381345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 28979713 - 28979785
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  28979713 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 28979785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 28979864 - 28979936
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  28979864 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 28979936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41048307 - 41048235
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  41048307 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 41048235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 48270171 - 48270099
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  48270171 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 48270099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 46862886 - 46862944
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  46862886 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaat 46862944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 42682321 - 42682256
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  42682321 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 42682256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 46863037 - 46863102
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  46863037 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 46863102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 48316017 - 48316082
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||| ||||||| |||||||||||| |||||||| ||||| |||| |||||||||||||||||||    
T  48316017 acatatacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaataaattat 48316082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 21187978 - 21188050
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| |||||||||| |||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  21187978 acataatcatcatgcaaccattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 21188050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 21188132 - 21188204
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||| |||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  21188132 acataaacatcgtgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 21188204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 34140381 - 34140325
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaa 234  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  34140381 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaa 34140325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 42682472 - 42682400
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||||| ||||||||| | |||| ||||||    
T  42682472 acataatcatcatgcaaacattttaactaaattaatcaaccaacatctaatctaaaaatgatttataacatgt 42682400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 43686493 - 43686565
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||| | ||||||||| | |||| ||||||    
T  43686493 acataatcatcatgcaaacattttaactaaattaatcaactaacatcaaatctaaaaatgatttataacatgt 43686565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 48315866 - 48315938
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| | |||| ||||||    
T  48315866 acataatcatcatgcaaacattttaactaaattaatgaactaacatctaatctaaaaatgatttataacatgt 48315938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 28115235 - 28115300
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| ||||||||||||  ||||||| ||||| |||| |||||||||||| ||||||    
T  28115235 acataaacatcatacaaacattttaacgaaattaaacaactaacatttactctaaaaatgaattat 28115300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 41048156 - 41048091
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| | || |||||||||||| ||||||    
T  41048156 acataaacatcatacaaacattttaactaaattaagcaactaatatttactctaaaaatgaattat 41048091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 48270020 - 48269955
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| ||||||||||||  |||||||  |||| |||| |||||||||||||||||||    
T  48270020 acataaacatcatacaaacattttaacgaaattaagtaactaacatttactctaaaaataaattat 48269955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 21650085 - 21650013
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||| |||||||||| |||  | ||||||||| | ||||||||||||||||| |||||| ||||||    
T  21650085 acataaacatcttgcaaacattataacaacattaatcaaataacatctactctaaaaatgaattataacatgt 21650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 45363924 - 45363996
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  45363924 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 45363996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 36394483 - 36394556
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaac-tgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||| || | ||||||| ||||||||| | |||| ||||||    
T  36394483 acataatcatcatgcaaacattttaactaaattaatctacttaacatctaatctaaaaatgatttataacatgt 36394556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 36394635 - 36394692
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaa 235  Q
    ||||||||||||| |||||||||| | |||||||| ||||| |||| |||||||||||    
T  36394635 acataaacatcatacaaacattttcactaaattaagcaactaacatttactctaaaaa 36394692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 9367415 - 9367487
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  9367415 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 9367487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 13916525 - 13916453
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||| ||||| |||||||  |||||||| |||||| ||||||    
T  13916525 acataaacatcatgcaaatattttaacaacattaagcaactaacatctatcctaaaaattaattataacatgt 13916453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 20564482 - 20564410
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  20564482 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 20564410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 28115092 - 28115156
Alignment:
Q  186 atcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||| || |||||||||||||| ||||||| || |||||| | |||| ||||||    
T  28115092 atcatgcaaacatttgaactaaattaatcaactaacatctaatccaaaaatgatttataacatgt 28115156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 34140231 - 34140159
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||| ||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  34140231 acataaacatcatgaaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 34140159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 11608369 - 11608411
Alignment:
Q  132 catcaaattgtttttaagtaataaagtgataagtaagatcgtc 174  Q
    ||||||| |||||| |||||||||| |||||||||||||||||    
T  11608369 catcaaactgttttcaagtaataaattgataagtaagatcgtc 11608411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 43686636 - 43686708
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||| | ||||  || |||||||| |||||| ||||||    
T  43686636 acataaacatcatgcaaatattttaacaacattaatcaaataacatgcaccctaaaaattaattataacatgt 43686708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 14773180 - 14773252
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||||    
T  14773180 acataaacatcatgcaaacattttaattaaattaatcaacttacatctgctctaaaaatgaattataacatgt 14773252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 24364413 - 24364485
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||| ||||||    
T  24364413 acataaacatcatgcaaacatttaaactaaattaatcaactaacatctactctaaaaatgaattataacatgt 24364485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 13147867 - 13147795
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  13147867 acataaacatcatgcaaacattttaacaacattaatcaactaacatctactctaaaaatgaattataacatgt 13147795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 16098576 - 16098646
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||||| ||||    
T  16098576 acataaacatcatgcaaatattttaactaaattaatctacttacatctactctaaaaatgaattataacat 16098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 13972440 - 13972368
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  13972440 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 13972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 36909076 - 36909004
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  36909076 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 36909004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 49396218 - 49396146
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  49396218 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 49396146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 6435284 - 6435214
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  6435284 ataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 6435214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 6435135 - 6435070
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| ||||||    
T  6435135 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattat 6435070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 41780057 - 41779992
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  41780057 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 41779992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 42572467 - 42572532
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  42572467 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 42572532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 49927064 - 49927129
Alignment:
Q  185 catcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  49927064 catcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 49927129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 14174452 - 14174508
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaa 234  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  14174452 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaa 14174508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 49427076 - 49427004
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||    
T  49427076 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaattataacatgt 49427004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 29709010 - 29709080
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||||||||||| |||||||  | ||||||||||| | ||||||||||||||| |||||| ||||    
T  29709010 acataaacatcatgcaaatattttaacaacattaatcaactaatatctactctaaaaattaattataacat 29709080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 31452346 - 31452408
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||  |||||||||| || ||||||||||||||||| |||||| ||||||    
T  31452346 catgcaaacattttaacaaaattaatcatcttacatctactctaaaaatgaattataacatgt 31452408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 4208767 - 4208702
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| | |||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  4208767 acataaacatcatacgaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 4208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 14174603 - 14174668
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| | ||| |||| |||||||||||| ||||||    
T  14174603 acataaacatcatacaaacattttaactaaattaagcgactaacatttactctaaaaatgaattat 14174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 29435338 - 29435273
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||||||||||| |||||||  | || |||||||| ||||||||||||||||| ||||||    
T  29435338 acataaacatcatgcaaatattttaacaacatcaatcaactaacatctactctaaaaattaattat 29435273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 35526725 - 35526790
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||| ||| ||||| |||| |||||||||||| ||||||    
T  35526725 acataaacatcatacaaacattttaactaaagtaagcaactaacatttactctaaaaatgaattat 35526790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 49395967 - 49395902
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||| || |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  49395967 acataaacataatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 49395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 49396067 - 49396002
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||| || |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  49396067 acataaacataatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 49396002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 19160007 - 19159935
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  19160007 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 19159935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 27487371 - 27487443
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  27487371 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 27487443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 44597225 - 44597153
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  44597225 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 44597153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 41780204 - 41780135
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||| ||||||| ||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  41780204 ataatcatcatg-aaacattttaactaaattaatcaactaacatctaatctaaaaattatttataacatgt 41780135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 36908925 - 36908860
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||||||  || |||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  36908925 acataaacatcatagaatcattttaactaaattaagcaactaacatttactctaaaaatgaattat 36908860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 13635807 - 13635879
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| ||| |||| |||||| ||||||    
T  13635807 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctacaaattaattataacatgt 13635879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 29762902 - 29762974
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||| ||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  29762902 acataaacattatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 29762974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 49927208 - 49927280
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||| ||||| |||||||  | |||||| |||| |||| |||||||||||| |||||| ||||||    
T  49927208 acataaacatcacgcaaatattttaagaacattaattaactaacatttactctaaaaattaattataacatgt 49927280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 19263112 - 19263174
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||  ||||||||||||| | ||||||| ||||||| ||| || ||||||    
T  19263112 catgcaaacattttaacaaaattaatcaacttatatctactttaaaaatgaatcataacatgt 19263174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 26636918 - 26636983
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||||||  || |||||||| |||||||| |||||  ||| |||||||||||| ||||||    
T  26636918 acataaacatcatataagcattttaactaaattaagcaactagcatttactctaaaaatgaattat 26636983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 24478 - 24406
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||| ||||||    
T  24478 acataaacatcatgcaaacattttaactaaattaatcaactaacatctactctaaaaaggaattataacatgt 24406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 31992584 - 31992656
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||| ||||||    
T  31992584 acataaacatcatgcaaacattttaacaaaattaatcaacttacatctactctaaaaatgaattataacatgt 31992656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 31992402 - 31992473
Alignment:
Q  179 cataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||| ||||||    
T  31992402 cataaacatcatgcaaacattttaacaaaattaatcaacttacatctactctaaaaatgaattataacatgt 31992473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 15892279 - 15892341
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaat 240  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  15892279 acataaacatcatgcaaacattttaactaaattaatcaacttacatctactcttaaaataaat 15892341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 10365324 - 10365396
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||| ||||||    
T  10365324 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaataatttataacatgt 10365396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 2648641 - 2648569
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  2648641 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 2648569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 2920049 - 2920121
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  2920049 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 2920121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 16581017 - 16580945
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  16581017 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 16580945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 19472318 - 19472390
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  19472318 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 19472390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 24512706 - 24512634
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  24512706 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 24512634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 35491154 - 35491082
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  35491154 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 35491082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 2920199 - 2920264
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  2920199 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 2920264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 24512552 - 24512483
Alignment:
Q  181 taaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| |||||| ||||||    
T  24512552 taaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaattaattataacatgt 24512483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 43491488 - 43491423
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |||| |||||| ||||| ||||||    
T  43491488 acataaacatcatacaaacattttaattaaattaagcaactaacatttactcttaaaatgaattat 43491423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 16580866 - 16580794
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||| ||||||| |||||| ||||||    
T  16580866 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactttaaaaattaattataacatgt 16580794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 26858685 - 26858621
Alignment:
Q  186 atcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  26858685 atcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 26858621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41499768 - 41499840
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  41499768 acataatcatcatgcaaatattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 41499840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41499918 - 41499990
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||| ||||||    
T  41499918 acataaacatcatgcaaatattttaacaacattaattaactaacatctactctaaaaattaattataacatgt 41499990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 12496239 - 12496301
Alignment:
Q  112 atgactaaatttggcaacaacatcaaattgtttttaagtaataaagtgataagtaagatcgtc 174  Q
    |||||||||||| ||||   | ||||| |||||||||||||||||||||||||||||||||||    
T  12496239 atgactaaatttagcaaatgcgtcaaaatgtttttaagtaataaagtgataagtaagatcgtc 12496301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 19472468 - 19472526
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||||||||    
T  19472468 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaat 19472526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 26858543 - 26858478
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| || | |||||||||||| ||||||    
T  26858543 acataaacatcatacaaacattttaactaaattaagcaactaacctttactctaaaaatgaattat 26858478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 40679305 - 40679370
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||| | |||| |||||||||||| ||||||    
T  40679305 acataaacatcatacaaacattttaactaaattaagcaattaacatttactctaaaaatgaattat 40679370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 3941271 - 3941199
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  3941271 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 3941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 15892436 - 15892476
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaact 218  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  15892436 acataaacatcatgcaaacattttaactaaattaatcaact 15892476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28472471 - 28472399
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  28472471 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaatcaattataacatgt 28472399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 35491002 - 35490938
Alignment:
Q  179 cataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    |||||||||||| |||||||||||| |||||||| ||||| |||| | |||||||||| ||||||    
T  35491002 cataaacatcatacaaacattttaactaaattaagcaactaacattttctctaaaaatgaattat 35490938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 34638515 - 34638445
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||    
T  34638515 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacat 34638445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 2648490 - 2648417
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaa-ctgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| || || ||||||||||||||||| |||||| ||||||    
T  2648490 acataaacatcatgcaaatattttaacaacattaattaaactaacatctactctaaaaattaattataacatgt 2648417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17424514 - 17424442
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  17424514 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 17424442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 28747418 - 28747466
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||||||  ||||||||||||| |||| ||||||||||||    
T  28747418 catgcaaacattttaacaaaattaatcaacttacatatactctaaaaat 28747466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 39800348 - 39800420
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| ||| |||| |||||| ||||||    
T  39800348 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctacaaattaattataacatgt 39800420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 43982581 - 43982509
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  43982581 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 43982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 10365475 - 10365520
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacat 223  Q
    ||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  10365475 acataaacatcatacaaacattttaactaaattaagcaactaacat 10365520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 29067424 - 29067352
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||| ||||| |||||||  | ||||||||||| || ||||  |||||||| |||||| ||||||    
T  29067424 acataaacatcaggcaaatattttaacaacattaatcaactaacttctatcctaaaaattaattataacatgt 29067352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 31014145 - 31014203
Alignment:
Q  112 atgactaaatttggcaacaacatcaaattgtttttaagtaataaagtgataagtaagat 170  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  31014145 atgactaaatttggcaacaacatcaaactgttttcaagtaataaagtgataagtaagat 31014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 3589714 - 3589786
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||| |||||| ||||||    
T  3589714 acataaacatcatgcaaacattttaacaaaattaatcaacttacatctaccctaaaaatgaattataacatgt 3589786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 31172426 - 31172498
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||    
T  31172426 acataaacaccatggaaacattttaataaaattaatcaacttacatctactctaaaaatgaattataacatgt 31172498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 3589891 - 3589963
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||| || ||||||    
T  3589891 acataaatatcatgcaaacattttaaaaaaattaatcaacttacatctactctaaaaatgaatcataacatgt 3589963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 37780167 - 37780095
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  37780167 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 37780095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41857665 - 41857737
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  41857665 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 41857737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 15032838 - 15032910
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||    
T  15032838 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaattataacatgt 15032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 18440985 - 18441057
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||| ||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  18440985 acataatcatgatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 18441057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 37780016 - 37779944
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||| ||||||    
T  37780016 acataaacatcatgcaaatattttaacaacattaattaactaacatctactctaaaaattaattataacatgt 37779944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 40701151 - 40701079
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| |||||||||||||| |||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  40701151 acataatcatcatgcaaacatcttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 40701079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 42602978 - 42602920
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||||||| |||||||||    
T  42602978 acataatcatcatgcaaatattttaactaaattaatcaactaacatctaatctaaaaat 42602920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 18441136 - 18441201
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||| ||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  18441136 acataaacatcatacaaatattttaactaaattaagcaactaacatttactctaaaaatgaattat 18441201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41857816 - 41857888
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||  ||||||  | |||||| |||| ||||||||||||||||| |||||| ||||||    
T  41857816 acataaacatcatgcaaattttttaacaacattaattaactaacatctactctaaaaattaattataacatgt 41857888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 42602827 - 42602755
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||| ||||||||||| |||||| ||||||    
T  42602827 acataaacatcatgcaaatattttaacaacattaattaactaacatccactctaaaaattaattataacatgt 42602755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 38872112 - 38872046
Alignment:
Q  178 acataaacatcatgcaaacatttt-aattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||| || |||||||| ||||| |||| |||||||||||| ||||||    
T  38872112 acataaacatcatacaaacatttttaactaaattaagcaactaacatttactctaaaaatgaattat 38872046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 485741 - 485813
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  485741 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 485813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 22547823 - 22547751
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||| | ||||| || |||||||| |||||| ||||||    
T  22547823 acataaacatcatgcaaatattttaacaacattaatcaattaacatccaccctaaaaattaattataacatgt 22547751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 26451859 - 26451787
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || || ||||| |||||| ||||||    
T  26451859 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctgaaaattaattataacatgt 26451787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41274970 - 41274898
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| | ||| || |||||||| |||||| ||||||    
T  41274970 acataaacatcatgcaaatattttaacaacattaatcaactaaaatccaccctaaaaattaattataacatgt 41274898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 24860902 - 24860828
Alignment:
Q  178 acataaacatcatgcaaa-catttt-aattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||| |||||| || |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  24860902 acataatcatcatgcaaaacatttttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 24860828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 23950262 - 23950193
Alignment:
Q  179 cataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||| ||||    
T  23950262 cataaacatcatgcaaacattttaactaaattaatctacttacatctactctaaaaatgaattataacat 23950193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 958151 - 958223
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  958151 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 958223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 11287864 - 11287800
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaatta 242  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||    
T  11287864 acataaacatcatgcaaccattttaactaaattaatcaactaacatatactctaaaaatgaatta 11287800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34154122 - 34154194
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  34154122 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 34154194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 243040 - 243105
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  243040 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 243105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 49426606 - 49426671
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  49426606 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 49426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 6283018 - 6283090
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||| ||| ||||||||| | |||| ||||||    
T  6283018 acataatcatcatgcaaacattttaactaaattaatcaactaacacctaatctaaaaatgatttataacatgt 6283090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 6283169 - 6283241
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||| ||||||    
T  6283169 acataaacatcatgcaaatattttaacaacattaattaactaacatctactctaaaaattaattataacatgt 6283241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17291544 - 17291472
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||   | |||||||||| ||||||||||| ||||| |||||| ||||||    
T  17291544 acataaacatcatgcaaacattttaacagatttaatcaacttacatctactctgaaaatgaattataacatgt 17291472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 37865618 - 37865546
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| |||||||||||||| |||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  37865618 acataatcatcatgcaaacatcttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 37865546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 44560874 - 44560946
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||||||    
T  44560874 acataatcatcatgcaaacattttaactaaattaatcaattaacatctaatctaaaaatgatttataacatgt 44560946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 49426455 - 49426511
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaa 234  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  49426455 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaa 49426511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 51428884 - 51428940
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  51428884 ataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaat 51428940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 44561024 - 44561094
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||| ||||    
T  44561024 acataaacatcatgcaaatattttaacaacattaattaactaacatctactctaaaaattaattataacat 44561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 958302 - 958367
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| || | |||||||||||| ||||||    
T  958302 acataaacatcatacaaacattttaactaaattaagcaactaacgtttactctaaaaatgaattat 958367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 29700006 - 29700071
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| | || |||||||||||| ||||||    
T  29700006 acataaacatcatacaaacattttaactaaattaagcaactaatatttactctaaaaatgaattat 29700071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 42885827 - 42885762
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||||||||||||||||  | ||||||||| | || |||||||||||||| ||||||    
T  42885827 acataaacatcatgcaaacattttaacaacattaatcaattaacttctactctaaaaatgaattat 42885762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 51429032 - 51429097
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||| ||| |||||||| ||||| |||| |||||||||||| ||||||    
T  51429032 acataaacatcatacaaacattctaactaaattaagcaactaacatttactctaaaaatgaattat 51429097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 1042313 - 1042241
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  1042313 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 1042241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 21017694 - 21017766
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| || ||| ||||||    
T  21017694 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaactataacatgt 21017766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25143796 - 25143748
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  25143796 catgcaaacattttaacaaaattaatcaacttacatctactctaaaaat 25143748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28081847 - 28081775
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||| ||||||||| |||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||    
T  28081847 acataaacttcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaattataacatgt 28081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 39588453 - 39588381
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  39588453 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 39588381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 40354291 - 40354363
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  40354291 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 40354363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 56138631 - 56138559
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  56138631 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 56138559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 6177801 - 6177873
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  6177801 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 6177873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 13181809 - 13181881
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| ||| |||| |||||| ||||||    
T  13181809 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctacaaattaattataacatgt 13181881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34153972 - 34154043
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||  ||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  34153972 acataatcatcatgcaat-attttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 34154043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41795047 - 41795119
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  41795047 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 41795119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 49094466 - 49094394
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  49094466 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 49094394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 55794304 - 55794232
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| | || ||| |||||||| |||||| ||||||    
T  55794304 acataaacatcatgcaaatattttaacaacattaatcaactaaaatataccctaaaaattaattataacatgt 55794232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 4786039 - 4786111
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||| ||||||| ||| |||  | ||||||||||| |||| |||||||||||| || ||| ||||||    
T  4786039 acataaacattatgcaaatattctaacaacattaatcaactaacatttactctaaaaatgaactataacatgt 4786111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34530479 - 34530551
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||| | ||||| |  |||||||| |||||| ||||||    
T  34530479 acataaacatcatgcaaatattttaacaacattaatcaagtaacatccatcctaaaaattaattataacatgt 34530551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 14114596 - 14114526
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  14114596 ataaacatcatgcaaacattttaacaacattaatcaactaacatctactctaaaaatgaattataacatgt 14114526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 17596154 - 17596226
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  17596154 acataatcatcatgcaaatattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 17596226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 30258005 - 30258077
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||| ||||||||||||  | || |||||||| ||||||||||||||||| |||||| ||||||    
T  30258005 acataaacatcatacaaacattttaacaacataaatcaactaacatctactctaaaaatgaattataacatgt 30258077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 30765602 - 30765674
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||||||||||  |||||||||||||  |||||||||| ||||| ||| || ||||||    
T  30765602 acataaacatcatgcaaacattttaacaaaattaatcaacttgcatctactcttaaaatgaatcataacatgt 30765674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 34634709 - 34634637
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| | |||| ||||||    
T  34634709 acataatcatcatgcaaacattttaactaatttaatcaactaacatctaatctaaaaatgatttataacatgt 34634637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 17596525 - 17596582
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaa 235  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||    
T  17596525 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaa 17596582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 13401895 - 13401823
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||| ||||||| |||||||  | ||||||||||| |||| |||||||||||| |||||| ||||||    
T  13401895 acataaacattatgcaaatattttaacaacattaatcaactaacatatactctaaaaattaattataacatgt 13401823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 13402047 - 13401974
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaac-tgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||| || | ||||||| ||||||||| | |||| ||||||    
T  13402047 acataatcatcatgcaaacattttaactaaattaatctacttaacatctaatctaaaaatgatttataacatgt 13401974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 34634558 - 34634493
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||  || | |||||||||||| ||||||    
T  34634558 acataaacatcatacaaacattttaactaaattaagcaaccaacctttactctaaaaatgaattat 34634493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 6205209 - 6205137
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  6205209 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 6205137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 11692176 - 11692104
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  11692176 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 11692104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 21865358 - 21865410
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaataaat 240  Q
    ||||||||||||||||  ||||||||||||| | ||||||||| |||||||||    
T  21865358 catgcaaacattttaacaaaattaatcaacttatatctactcttaaaataaat 21865410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 22305496 - 22305424
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| ||| |||| |||||| ||||||    
T  22305496 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctacaaattaattataacatgt 22305424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27639907 - 27639835
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  27639907 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 27639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 32034088 - 32034153
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||| || || |||||||||||| |||||||| ||||| || | |||||||||||| ||||||    
T  32034088 acataaatattatacaaacattttaactaaattaagcaactaacctttactctaaaaatgaattat 32034153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 19453894 - 19453952
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  19453894 acataaacatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaat 19453952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 2428022 - 2427965
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaa 235  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2428022 acataatcatcatgcaaacattttaactaaattaatcaactaacatctactctaaaaa 2427965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 13896560 - 13896632
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||| | |||| ||||||    
T  13896560 acataatcatcatgcaaacattttaactaaattaatccactgacatctaatctaaaaatgatttataacatgt 13896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 20378454 - 20378522
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||| |||||| ||||    
T  20378454 ataaacatcatggaaacattttaactaaattaatcaacttacatctactctaataatgaattataacat 20378522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 43569449 - 43569377
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  43569449 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 43569377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 52570102 - 52570174
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  52570102 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 52570174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 19454047 - 19454112
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  19454047 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 19454112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 24702969 - 24703034
Alignment:
Q  185 catcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  24702969 catcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 24703034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34647914 - 34647986
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||||| ||||||||||||||  | ||||||||||| ||||||||||||||||| | |||| ||||||    
T  34647914 acataaacatcgtgcaaacattttaacaacattaatcaactaacatctactctaaaaatgagttataacatgt 34647986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34693967 - 34694039
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||| ||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  34693967 acataatcatcatgcatacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 34694039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 36134712 - 36134640
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||    
T  36134712 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaattataacatgt 36134640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41803367 - 41803295
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||| ||||||    
T  41803367 acataaacatcatgcaaatattttaacaacattaattaactaacatctactctaaaaattaattataacatgt 41803295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41803518 - 41803446
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||||||    
T  41803518 acataatcatcatgcaaacattttaactaaattaatcaattaacatctaatctaaaaatgatttataacatgt 41803446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 43569294 - 43569226
Alignment:
Q  182 aaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  43569294 aaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 43569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 45101156 - 45101228
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||| ||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  45101156 acataatcatcatgtaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 45101228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 46347415 - 46347487
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| | ||||||||||||||| |||||| ||||||    
T  46347415 acataaacatcatgcaaatattttaacaacattaatcaactaatatctactctaaaaattaattataacatgt 46347487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 49219339 - 49219411
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| | ||||| ||||||||| | |||| ||||||    
T  49219339 acataatcatcatgcaaacattttaactaaattaatcaactaaaatctaatctaaaaatgatttataacatgt 49219411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 7245622 - 7245564
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    |||||| ||| ||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  7245622 acataatcattatgcaaacattttaactaaattaatcaactaacatctaatctaaaaat 7245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 52570253 - 52570311
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||||||||    
T  52570253 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaat 52570311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 7245472 - 7245407
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| | || |||||||||||| ||||||    
T  7245472 acataaacatcatacaaacattttaactaaattaagcaactaatatttactctaaaaatgaattat 7245407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 2647391 - 2647463
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  2647391 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 2647463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34694117 - 34694189
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  34694117 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 34694189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 43476582 - 43476510
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  43476582 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 43476510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 51401952 - 51402024
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||| ||||||| |||||||| ||||| ||||||| ||||||||| | |||| ||||||    
T  51401952 acataatcatcatgcaaatattttaactaaattaaacaactaacatctaatctaaaaatgatttataacatgt 51402024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 55207347 - 55207419
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  |  ||||| |||| ||||||||||||||||| |||||| ||||||    
T  55207347 acataaacatcatgcaaatattttaacaacgttaattaactaacatctactctaaaaattaattataacatgt 55207419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 55385528 - 55385456
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  55385528 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 55385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 20366604 - 20366556
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatcta 226  Q
    |||||| ||||||||||| ||||||| |||||||||||||| |||||||    
T  20366604 acataatcatcatgcaaatattttaactaaattaatcaactaacatcta 20366556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 24703113 - 24703185
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| ||  ||||||| |||||| ||||||    
T  24703113 acataaacatcatgcaaatattttaacaatattaatcaactaacatccaccttaaaaattaattataacatgt 24703185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 34049462 - 34049390
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  34049462 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 34049390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 46402738 - 46402666
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  46402738 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 46402666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 49140538 - 49140610
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  49140538 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 49140610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 49609751 - 49609679
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||| ||||||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  49609751 acataaacatgatgcaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 49609679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 50343235 - 50343283
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||||||  ||||||||||||| | |||||||||||||||    
T  50343235 catgcaaacattttaacaaaattaatcaacttaaatctactctaaaaat 50343283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 54390177 - 54390105
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  54390177 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 54390105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 18437025 - 18436974
Alignment:
Q  197 attttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    ||||||| |||||||||||||| ||||||||| ||||||| |||||| ||||    
T  18437025 attttaactaaattaatcaacttacatctactataaaaatgaattataacat 18436974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 46347268 - 46347314
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatcta 226  Q
    |||| ||||||||||| ||||||| |||||||||||||| |||||||    
T  46347268 ataatcatcatgcaaatattttaactaaattaatcaactaacatcta 46347314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 2269008 - 2269056
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatcta 226  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||    
T  2269008 acataaacatcatgcaaatattttaacaacattaatcaactaacatcta 2269056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 45101307 - 45101347
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaact 218  Q
    ||||||||||||| |||||||||||| |||||||| |||||    
T  45101307 acataaacatcatacaaacattttaactaaattaagcaact 45101347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 51402105 - 51402177
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||| ||||||||| |||||||  | |||||| || |  |||||||||||||||| |||||| ||||||    
T  51402105 acataaacgtcatgcaaatattttaacaacattaattaattagcatctactctaaaaattaattataacatgt 51402177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 51696279 - 51696351
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||| ||  ||||||| || ||| ||||||    
T  51696279 acataaacatcatgcaaatattttaacaacattaatcaactaacatccaccataaaaattaactataacatgt 51696351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 542335 - 542407
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  542335 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 542407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 3600856 - 3600784
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  3600856 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 3600784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 18307621 - 18307549
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  18307621 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 18307549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 18307772 - 18307700
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  18307772 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 18307700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 25497909 - 25497837
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  25497909 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 25497837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 35564784 - 35564712
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  35564784 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 35564712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 42865498 - 42865570
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||||||||||| |||||| ||||||    
T  42865498 acataaacatcatgcaaatattttaacaacattaatcaactaacatctactctaaaaattaattataacatgt 42865570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 3600705 - 3600640
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  3600705 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 3600640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 35564634 - 35564569
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  35564634 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 35564569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 11346396 - 11346324
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| |||||| ||||||    
T  11346396 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaattataacatgt 11346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 13131700 - 13131772
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||| | ||||||||||||||||  ||||||||||||| ||||||||||||||||| || ||| ||||||    
T  13131700 acataaataccatgcaaacattttaacaaaattaatcaacttacatctactctaaaaatgaactataacatgt 13131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 42865345 - 42865417
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||| ||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  42865345 acataatcatgatgcaaacattttaactaaattaatcaactaacatctaatctaaaaatgatttataacatgt 42865417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 20192701 - 20192638
Alignment:
Q  180 ataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||| |||||||||||| ||||||    
T  20192701 ataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaatgaattat 20192638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 35928491 - 35928561
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacat 248  Q
    |||||||||| |||||||||||||||  ||||||||||| | ||||||||||||||| | |||||| ||||    
T  35928491 acataaacatgatgcaaacattttaacaaaattaatcaattaacatctactctaaaagtgaattataacat 35928561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 1400996 - 1401068
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||| ||||||||||||||||||| |||||||| ||||| |||| || ||||||||| | |||| ||||||    
T  1400996 acataatcatcatgcaaacattttaactaaattaaccaactaacatataatctaaaaatgatttataacatgt 1401068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 8537554 - 8537482
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| ||||||||  ||||||| |||||| ||||||    
T  8537554 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccttaaaaattaattataacatgt 8537482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 17195808 - 17195860
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaataaat 240  Q
    |||||||| |||||||| ||||||||||||| |||||||| ||||||||||||    
T  17195808 catgcaaatattttaataaaattaatcaacttacatctacgctaaaaataaat 17195860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 27661895 - 27661967
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  27661895 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 27661967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28880704 - 28880632
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  28880704 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 28880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 30709287 - 30709215
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  30709287 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 30709215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 1401147 - 1401212
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattat 243  Q
    ||||| ||||||| |||||||||||| |||||||| ||||| |||| ||| |||||||| ||||||    
T  1401147 acatagacatcatacaaacattttaactaaattaagcaactaacatttacactaaaaatgaattat 1401212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 542487 - 542559
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | |||||| |||| ||||| || |||||||| |||||| ||||||    
T  542487 acataaacatcatgcaaatattttaacaacattaatgaactaacatccaccctaaaaattaattataacatgt 542559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 20192842 - 20192782
Alignment:
Q  190 tgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||| ||||||||| |||| ||||||| ||||||||| | |||| ||||||    
T  20192842 tgcaaacattttaactaaattaattaactaacatctaatctaaaaatgatttataacatgt 20192782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 21290360 - 21290314
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaa 234  Q
    ||||||||||||||||  ||||||||||||| ||||||||| |||||    
T  21290360 catgcaaacattttaacaaaattaatcaacttacatctactttaaaa 21290314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 25497758 - 25497692
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaact-gacatctactctaaaaataaattat 243  Q
    ||||||||||||| |||||||||||| |||||||| |||||  | || |||||||||||| ||||||    
T  25497758 acataaacatcatacaaacattttaactaaattaagcaactaaaaatttactctaaaaatgaattat 25497692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 8576663 - 8576731
Alignment:
Q  182 aaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||||| |||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  8576663 aaacatcatccaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 8576731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 11027472 - 11027400
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||  ||| |||| |||||| ||||||    
T  11027472 acataaacatcatgcaaatattttaacaacattaatcaactaacatatagcctacaaattaattataacatgt 11027400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 19037161 - 19037233
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    ||||||| |||||||||| |||||||  | ||||||||||| |||| ||| |||||| | |||||| ||||||    
T  19037161 acataaatatcatgcaaatattttaacaacattaatcaactaacatataccctaaaatttaattataacatgt 19037233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 1306 - 1250
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaa 234  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  1306 acataatcatcatgcaaacattttaactaaattaatcaactaacatctaatctaaaa 1250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 1156 - 1084
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||| ||| |||||||  | ||||||||||| ||||| || |||||||| |||||| ||||||    
T  1156 acataaacatcatgaaaatattttaacaacattaatcaactaacatccaccctaaaaattaattataacatgt 1084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 18582 - 18640
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||||||||    
T  18582 acataaacatcatacaaacattttaactaaattaagcaactaacatttactctaaaaat 18640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 36219 - 36291
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaattatcacatgt 250  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||| ||| |||||||| |||||| ||||||    
T  36219 acataaacatcatgcaaatattttaacaacattaatcaactaacatataccctaaaaattaattataacatgt 36291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 11778 - 11841
Alignment:
Q  178 acataaacatcatgcaaacattttaattaaattaatcaactgacatctactctaaaaataaatt 241  Q
    |||||||||||||||||| |||||||  | ||||||||||| |||||||| |||||||| ||||    
T  11778 acataaacatcatgcaaatattttaacaacattaatcaactaacatctaccctaaaaattaatt 11841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 153938 - 153890
Alignment:
Q  188 catgcaaacattttaattaaattaatcaactgacatctactctaaaaat 236  Q
    ||||||||||||||||  ||||||||||||| || ||||||||||||||    
T  153938 catgcaaacattttaacaaaattaatcaacttacctctactctaaaaat 153890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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