View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_3 (Length: 705)
Name: NF17942_low_3
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 118 - 701
Target Start/End: Complemental strand, 1252661 - 1252076
Alignment:
| Q |
118 |
tgtattattttatgaataa-ggttcttccttctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
213 |
Q |
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| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
|
| Q |
214 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgta |
313 |
Q |
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| T |
1252561 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgtgttgcattttctgttttgaaataatatactgta |
1252462 |
T |
|
| Q |
314 |
agaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatcttttcaaaaattgcttga |
413 |
Q |
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| T |
1252461 |
agaatgttcaacctatcttttacaagacaaatc--ttgaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttttaaaaattgcttga |
1252364 |
T |
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| Q |
414 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
513 |
Q |
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| T |
1252363 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
1252264 |
T |
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| Q |
514 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
613 |
Q |
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| T |
1252263 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
1252164 |
T |
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| Q |
614 |
accgtgatgcacacagtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgagagtgtg |
701 |
Q |
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| T |
1252163 |
accgcgatgcacacggtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagcacacaggcagccagcgagagtgtg |
1252076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 49 - 695
Target Start/End: Complemental strand, 42019519 - 42018857
Alignment:
| Q |
49 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttccttc |
148 |
Q |
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| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
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| Q |
149 |
tatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaacaaccatat |
245 |
Q |
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| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaacaaccatat |
42019320 |
T |
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| Q |
246 |
gatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
345 |
Q |
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| T |
42019319 |
gatggtacttggtatcaaagtgcttgtt--aatgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
42019222 |
T |
|
| Q |
346 |
ctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatct-------tttcaaaaattgcttgataaacttattttgacatgttttaaa |
438 |
Q |
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| T |
42019221 |
ctttttaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaa |
42019122 |
T |
|
| Q |
439 |
gggatgtttgatgataacaatggtnnnnnnnntgacttggacaat----------gattgcatgtgggaatatgatggtgaaagttttctgggtgacgat |
528 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42019121 |
gggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgtgaaggattgcatgtgggaatatgatgctgaaagttttctgggtgacgat |
42019022 |
T |
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| Q |
529 |
atgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagttaccgtgatgcacaca |
628 |
Q |
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| T |
42019021 |
atgggggagaattatttcaacgatcatctgttgaaaccgaccactaggcttacgctgtaagagaagaagttgcagacttgcagttaccgcgatgcacacg |
42018922 |
T |
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| Q |
629 |
gtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgag |
695 |
Q |
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| T |
42018921 |
gtgtca-tgtggcaggagctgaactgct-gtaaagcagttgccggcagcacacaggcagccagtgag |
42018857 |
T |
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