View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_30 (Length: 233)
Name: NF17942_low_30
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 766523 - 766732
Alignment:
| Q |
6 |
tcaaagtaaatcttgtctaatgttaaataattatgtatatgtgagtctccgatataagtatcggtatccgatatggataattcggggtatcaaggctatt |
105 |
Q |
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| T |
766523 |
tcaaagtaagtcttgtctagtgttatctaattatgtatatgtgagtctccgataaa--tatcggtatccgatatgtataattcggggtatcaaggctatt |
766620 |
T |
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| Q |
106 |
ggagttatgtcttgtctaatgagttaatggatatcgatcacatgaggaatgagaatatagtgtttcatcctcaaatttgtggtcttgctaaagatactta |
205 |
Q |
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| T |
766621 |
ggagttatgtcttgtctaatgagttaatggatatcgatcacatgaggaatgagaatatagtgtttcatcctcaaatttgtggtcttggtaaagatactta |
766720 |
T |
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| Q |
206 |
atatgtggaggt |
217 |
Q |
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| T |
766721 |
atatgtggaggt |
766732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 789571 - 789666
Alignment:
| Q |
123 |
aatgagttaatggatatcgatcacatgaggaatgagaatatagtgtttcatcctcaaattt-gtggtcttgctaaagatacttaatatgtggaggt |
217 |
Q |
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| T |
789571 |
aatgagttcatggatatcgatcacatgaggaatgagaatatagtgtttcatcctcaaatttagtggtcttgctaaagatgcataatatgtggaggt |
789666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 785281 - 785340
Alignment:
| Q |
158 |
gaatatagtgtttcatcctcaaatttgtggtcttgctaaagatacttaatatgtggaggt |
217 |
Q |
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| T |
785281 |
gaatatagtgtttcatcctcaaatttgtggtcttgctaaagatgcataatttgtggaggt |
785340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 8456185 - 8456261
Alignment:
| Q |
37 |
tatgtatatgtgagtctccgatataagtatcggtatccgatatggataattcggggtatcaaggctattggagttatgt |
115 |
Q |
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| T |
8456185 |
tatgtatatgtgaatctctgata--agtattggtatccgatatgtataattcggggtatcaaggctattggaggtatgt |
8456261 |
T |
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