View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_7 (Length: 433)
Name: NF17942_low_7
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 99 - 415
Target Start/End: Original strand, 5383573 - 5383888
Alignment:
| Q |
99 |
ccatgtacaaataaggaagcaagattaccaaacccaagatcaaaggaatcattttaaatgtgttatgcaaaattttgaaactcaaactcaaatgaatcgt |
198 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
5383573 |
ccatgtacaaataaggaagcaagattaccaaacccgagatcaaaggaatcattttaaatgtgttatgcaatattttgaaactcaaactcaaatgaatcat |
5383672 |
T |
|
| Q |
199 |
ttgtttcaaactcaggaattgttttataccaaacccaaactcaaaggaatcaaactcaccaaaaagttgaaactgtgaaagagaccgagtttttccactg |
298 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5383673 |
ttatttcaaactcaggaattgttttataccaaacccaaactcaaaggaatcaaactcactaaaaagttgaaactgtgaaagagaccgagtttttccactg |
5383772 |
T |
|
| Q |
299 |
ccatgaaatcgacagcaaccacaacttcgttgagcaccacaagtcgccgcatatcctaacccctttcagatccctaaccccttttccatcaccttcgcaa |
398 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
5383773 |
ccatgaaatcg-cagcaaccacaacttcgttgagcaccgcaagccgctgcatatcataatccctttcagatccctaaccccttttccatcacctttgcaa |
5383871 |
T |
|
| Q |
399 |
ctcttctccctctcatc |
415 |
Q |
| |
|
||||||||||||||||| |
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| T |
5383872 |
ctcttctccctctcatc |
5383888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 99 - 415
Target Start/End: Complemental strand, 37324173 - 37323851
Alignment:
| Q |
99 |
ccatgtacaaataaggaagcaagattaccaaacccaagatcaaaggaatcattttaaatgtgttatgcaaaattttgaaactcaaactcaaatgaatcgt |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37324173 |
ccatgtacaaataaggaagcaagattaccaaacccaatattaaaggaatcattttaaatgtattatgcaaaattttgaaactcaaactcaaatgaatcgt |
37324074 |
T |
|
| Q |
199 |
ttgtttcaaactcagga-------attgttttataccaaacccaaactcaaaggaatcaaactcaccaaaaagttgaaactgtgaaagagaccgagtttt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37324073 |
ttgtttcaaactcaggattcaggaattgttttataccaaatccaaactctaaggaatcaaactcactaaaaagttgaaactgtgaaagagaccgagtttt |
37323974 |
T |
|
| Q |
292 |
tccactgccatgaaatcgacagcaaccacaacttcgttgagcaccacaagtcgccgcatatcctaacccctttcagatccctaaccccttttccatcacc |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||| ||| ||| |||||||||| |||||||||||||||||||||| |
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| T |
37323973 |
tccactgccatgaaatcg-cagcaaccacaacttcgttgagcaccgcaagccgcagcaaatcataaaccctttcagaaccctaaccccttttccatcacc |
37323875 |
T |
|
| Q |
392 |
ttcgcaactcttctccctctcatc |
415 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
37323874 |
ttcgcaactcttctccctctcatc |
37323851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 37324254 - 37324222
Alignment:
| Q |
10 |
acatcatcaatcaccttcatctcctttatcaca |
42 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
37324254 |
acatcaacaatcaccttcatctcctttatcaca |
37324222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 32338773 - 32338906
Alignment:
| Q |
217 |
ttgttttataccaaacccaaactcaaa-ggaatcaaactcaccaaaaagttgaaactgtga-aagagac-cgagtttttccactgccatgaaatcgacag |
313 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||| | | ||||| ||||||||||||| |||||| ||||| ||| |
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| T |
32338773 |
ttgttttataccaaacccaaacttaaaaggaatcaaattcacgaaaaagttgaaactgcaagaggagacacgagtttttccaccgccatggaatcg-cag |
32338871 |
T |
|
| Q |
314 |
caaccacaacttcgttgagcaccacaagtcgccgc |
348 |
Q |
| |
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||||||| | |||| ||||||| |||| |||||| |
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|
| T |
32338872 |
caaccaccaactcgtcgagcaccgcaagccgccgc |
32338906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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