View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17942_low_9 (Length: 416)
Name: NF17942_low_9
Description: NF17942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17942_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 12873313 - 12873691
Alignment:
| Q |
22 |
tactgattccttaaagtgcaggtcctggtaggtaattataaatttatgctgcatatgtatggtgtaggaagaagttttagtatggttttgttagtctggc |
121 |
Q |
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| T |
12873313 |
tactgattccttaaagtgcaggtcctggtaggtaattataaatttctgctgcatatgtatggtgtgggaagaagttttggtatggttttgttagtctggc |
12873412 |
T |
|
| Q |
122 |
tttaaggacatttgaagttttggtatggttttgttagtctggcttggactttgttcggttattattgagaaaattggatttaggtttggtatctatgaag |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
12873413 |
tttaaggacatttgaagttttggtatggttttgttagtctggcttggactttgttcggttattattgaggaaattggatttaggtct-gtatctatgaag |
12873511 |
T |
|
| Q |
222 |
aggaagcattatgttattttgttatgggatttccagtatttgtgtatgtaaagggagttagaactgcatcgattataagtcgtctgattgtgaatggatt |
321 |
Q |
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| T |
12873512 |
aggaagctttatgttattttgttatgggatttccagtatttgtgtatgtaaagggagttagaactacatcgattataagtcgtctaattgtgaatggatt |
12873611 |
T |
|
| Q |
322 |
cgtgaagagggaatttttgggatatacatagtatttggtctgcttgactgtttctggtgtgtcatctctggttgttctgt |
401 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
12873612 |
cgtgaagagggaatttttgggatatagatggtatttggtctgcttgactgtttctggcgtgtcatctttggttgttctgt |
12873691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 27770464 - 27770842
Alignment:
| Q |
22 |
tactgattccttaaagtgcaggtcctggtaggtaattataaatttatgctgcatatgtatggtgtaggaagaagttttagtatggttttgttagtctggc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
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| T |
27770464 |
tactgattccttaaagtgcaggtcctggtaggtaattataaatttatgctgcatatgtatggtgtaggaagaagttttggtatggttttattagtctgcc |
27770563 |
T |
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| Q |
122 |
tttaaggacatttgaagttttggtatggttttgttagtctggcttggactttgttcggttattattgagaaaattggatttaggtttggtatctatgaag |
221 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
27770564 |
tttaaggacatttgaagttttggtatgattttgttagtctggcttggactttgttcggttgttattgaggaaattggatttaggtttggtatctatgaag |
27770663 |
T |
|
| Q |
222 |
aggaagcattatgttattttgttatgggatttccagtatttgtgtatgtaaagggagttagaactgcatcgattataagtcgtctgattgtgaatggatt |
321 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||| |
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| T |
27770664 |
aggaagctttatgttattttgttatgggatttccagtatttgtgtatgtaaagggagttagaactacatcgattataagtctgctaactgtgaatggatt |
27770763 |
T |
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| Q |
322 |
cgtgaagagggaatttttgggatatacatagtatttggtctgcttgactgtttctggtgtgtcatctctggttgttctgt |
401 |
Q |
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||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
27770764 |
cgtgaagagggaa-tttcggaatatacatggtatttggtctgcttgactgtttctggcgtgtcatctttggttgttctgt |
27770842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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