View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_high_1 (Length: 742)

Name: NF17943_high_1
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_high_1
NF17943_high_1
[»] chr1 (1 HSPs)
chr1 (15-696)||(44973511-44974189)


Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 15 - 696
Target Start/End: Complemental strand, 44974189 - 44973511
Alignment:
Q  15 cataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtggaagggttagtgataggtgaagagttaagggaaagtgtaccactt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  44974189 cataggaagacatgcatcatgttgaggaacataagcagagagttttctgaatgtagaagggttagtgataggtgaagagttaagagaaagtgtaccactt 44974090  T
Q  115 aagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgaggg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44974089 aagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgcaccacttggaccaacaatggcaagaatctcagaagggtatgctgtgaggg 44973990  T
Q  215 aaacatctttgaggatgtagtttnnnnnnnttggtgtacaatgtttgaagaagagaaatggtgcaatgatggagttgtttgtttgtaggtttttggagta 314  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44973989 aaacatctttgaggatgtagtttgggggggttggtgtacaatgtttgaagaagagaaatggtgcaatgatggtgttgtttgtttgtaggtttttggagta 44973890  T
Q  315 agagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggtttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973889 agagattgaagttgctgttagtttgtatgtttttggtggaagtggtgatggttggttttccatagctaagggagagaagttggagtgaaattaaggtttt 44973790  T
Q  415 ggtgggatggaacaatgagtgtttgtgtttccatgcgtt-ggaatgtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaa 513  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973789 ggtgggatggaacaatgagtgtttgtgtttccatgcgttgggagagtataacgttggtgtggatgataaagagagacaaaaataaaggaataattaaaaa 44973690  T
Q  514 tgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcacttatatatatagtccgt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  44973689 tgttttgtaccttttggtggttgcattattatcctactatttttcctatcatggaattatactgtattacaagcaatcagcact----tatatagtccgt 44973594  T
Q  614 gagccttttgtgtttataaatgcaaaaatgatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 696  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973593 gagccttttgtgtttataaatgcaacaatcatatacattttatttaacaactcattattttcttgtatcatgcatacacccat 44973511  T

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