View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_high_10 (Length: 382)

Name: NF17943_high_10
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_high_10
NF17943_high_10
[»] chr2 (23 HSPs)
chr2 (11-364)||(39144402-39144755)
chr2 (11-362)||(39493464-39493815)
chr2 (11-362)||(39425558-39425909)
chr2 (85-357)||(39604196-39604468)
chr2 (11-357)||(39188784-39189130)
chr2 (85-355)||(39099467-39099737)
chr2 (19-294)||(39421276-39421551)
chr2 (76-288)||(39138517-39138729)
chr2 (172-342)||(39126453-39126623)
chr2 (97-277)||(2362574-2362751)
chr2 (11-98)||(39131147-39131234)
chr2 (98-357)||(39216550-39216809)
chr2 (73-198)||(39472959-39473084)
chr2 (97-284)||(39396755-39396942)
chr2 (74-357)||(39152928-39153211)
chr2 (105-357)||(39380524-39380776)
chr2 (97-291)||(39371009-39371203)
chr2 (73-147)||(44624647-44624721)
chr2 (85-288)||(39196609-39196812)
chr2 (85-141)||(39223594-39223650)
chr2 (97-134)||(44615298-44615335)
chr2 (85-141)||(39205988-39206044)
chr2 (97-141)||(44895353-44895397)
[»] chr3 (1 HSPs)
chr3 (72-357)||(51575855-51576137)
[»] chr4 (1 HSPs)
chr4 (97-276)||(33152038-33152214)
[»] chr6 (1 HSPs)
chr6 (74-288)||(16114236-16114450)
[»] chr7 (2 HSPs)
chr7 (97-148)||(19808798-19808849)
chr7 (236-288)||(19808934-19808986)
[»] chr5 (2 HSPs)
chr5 (85-141)||(33562169-33562225)
chr5 (73-148)||(17060514-17060589)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 39144402 - 39144755
Alignment:
Q  11 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144402 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccat 39144501  T
Q  111 caaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144502 caaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaa 39144601  T
Q  211 ggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39144602 ggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagccaatataagtcaaaacacagaa 39144701  T
Q  311 aattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144702 aattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggt 39144755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 39493815 - 39493464
Alignment:
Q  11 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccat 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  39493815 gatgaaagaagtttgatgttgctctcatctgagcaaactgatgagcttgagttgtttgatgatgacattcttggttatctgcaaggatcatcagatccat 39493716  T
Q  111 caaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaa 210  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  39493715 caaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccacattcttctgctcga 39493616  T
Q  211 ggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaa 310  Q
     ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||    
T  39493615 agaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaa 39493516  T
Q  311 aattcagcggcgattctaggttttctactccttctgtcaatttatgggctgg 362  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||| ||||    
T  39493515 aattcagttgcggttctaggttttctactccttctgtcaatttatggactgg 39493464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 39425909 - 39425558
Alignment:
Q  11 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccat 110  Q
    |||||||||||||||||||||||| ||||||||||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| |  ||||||||||    
T  39425909 gatgaaagaagtttgatgttgctcccatgtgagcaaacagaggaacttgagttgtctgacgatgacattctaggtaatctgcaaggcttttcagatccat 39425810  T
Q  111 caaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaa 210  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| |||||||||    
T  39425809 caaaagttgttttggaaataatacagaaccctattattaaaaagtgtaagatgggagatgatgctgttattattgaggatagccacattcatctgctcaa 39425710  T
Q  211 ggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaa 310  Q
     ||||| |||| ||||||||  ||||||| |||| ||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||  |||    
T  39425709 tgaacttaggagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacataagtcaaaacaatgaa 39425610  T
Q  311 aattcagcggcgattctaggttttctactccttctgtcaatttatgggctgg 362  Q
    |||||||||||  |||| ||||||||||| ||||||||||||||||| ||||    
T  39425609 aattcagcggctgttcttggttttctacttcttctgtcaatttatggactgg 39425558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 85 - 357
Target Start/End: Original strand, 39604196 - 39604468
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattatt 184  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||| |||||| ||||||||||||||    
T  39604196 taatctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattatt 39604295  T
Q  185 gatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttga 284  Q
    ||||||||  ||||||||||||||||  |||||| || ||||  || | |||||||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  39604296 gatgatagagacattcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttga 39604395  T
Q  285 aagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    || | || |||||| |||| || |||||||  | |||  |||| ||||||||||||||| |||||||||||||    
T  39604396 aatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatgg 39604468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 39189130 - 39188784
Alignment:
Q  11 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccat 110  Q
    |||||||||||||||||||||||| ||||||| |||||||| || |||||||   ||  ||| |||||||  |  ||| | ||||||| ||||||||| |    
T  39189130 gatgaaagaagtttgatgttgctcccatgtgatcaaactgacgaacttgagtcaatttgtgacgacattcaagtcaatttgcaaggattatcagatcctt 39189031  T
Q  111 caaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaa 210  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||     
T  39189030 caaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacattcttctgctcat 39188931  T
Q  211 ggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaa 310  Q
     | ||||| || ||||||||  || |||||||||||||||| ||| || |||||||  |||||||||||||| ||||| || || |   |||| |  | |    
T  39188930 agtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatgga 39188831  T
Q  311 aattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    |||||   || | |||| ||||||||||||||||| |||||||||||    
T  39188830 aattctttggtggttcttggttttctactccttctatcaatttatgg 39188784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 85 - 355
Target Start/End: Original strand, 39099467 - 39099737
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattatt 184  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||||||||| || |||||| |||||| |||||| |||||| ||||||||||||||    
T  39099467 taatctgcaaggattatcagatccatcaaaagtcgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattatt 39099566  T
Q  185 gatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttga 284  Q
    ||||| ||  |||||||||||||| |  |||||| || |||||||| | |||| ||||||  ||||| ||||||||| |||| ||| |||||| | ||||    
T  39099567 gatgaaagagacattcttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttga 39099666  T
Q  285 aagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 355  Q
    || |   ||||||| |||  || |||||||| | |||| |||| |||||||||||||||||||||||||||    
T  39099667 aatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttat 39099737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 39421551 - 39421276
Alignment:
Q  19 aagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggatcatcagatccatcaaaagtt 118  Q
    |||||||  ||||||| ||| |||||| |||||||| | |||||    || |||||||||||  |  ||||| |||||||  ||||||||| || | | |    
T  39421551 aagtttgcagttgctcccatttgagcagactgatgaacctgagtcccctggtgatgacattcaagtcaatctgcaaggattttcagatccagcacatgct 39421452  T
Q  119 gttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttctgctcaaggaactga 218  Q
    ||||||||||||||||||||||| |||||| |||||| |||||  |||||| ||| ||  |||||||| || | ||||||  |||||||  |  ||||||    
T  39421451 gttttggatataatacagaaccccattattcaaaagtataagaagggagacaatgatgcgattattgaagagaaccacatctttctgctagaacaactga 39421352  T
Q  219 ggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatat 294  Q
     ||||||||||| | |||||||| ||  |||||||||||||||| ||| ||| || |||||||||||||| |||||    
T  39421351 tgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatat 39421276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 39138517 - 39138729
Alignment:
Q  76 cattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgct 175  Q
    |||||| | |||||| |||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||  |  ||||||||  |||||  |||||    
T  39138517 cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgct 39138616  T
Q  176 gtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcac 275  Q
    || |||||||||||| ||  |||  |||||||  |  |||||| || ||||||||   | ||||||||| |||||| |||||||||| ||| ||||||||    
T  39138617 gtgattattgatgatggctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcac 39138716  T
Q  276 ttgatttgaaagc 288  Q
    || || |||||||    
T  39138717 ttaatctgaaagc 39138729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 342
Target Start/End: Original strand, 39126453 - 39126623
Alignment:
Q  172 tgctgtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggcta 271  Q
    |||||||||||||||| |  | ||| ||||||||||| |  |||||| || |||||||||| ||||| |||||| ||||| |||||||||||||| ||||    
T  39126453 tgctgtaattattgataacgggcacgttcttctgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagcta 39126552  T
Q  272 gcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactcct 342  Q
    || ||| | |||||| | || |||||| |||| ||   |||||||||||||||||| ||||||||||||||    
T  39126553 gctcttaaattgaaatctaacataagtgaaaaaacctgaaattcagcggcgattctgggttttctactcct 39126623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 2362574 - 2362751
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 196  Q
    |||||||||||||||||||| |||||| |||||||| |||||||| || |||  | ||||||||   |||||  ||| ||||||||||||||||  ||||    
T  2362574 atcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaag---ggagaaaatgttgtaattattgatgatcaccac 2362670  T
Q  197 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcactt 277  Q
    |||  ||||||| |  |||||| || |||||||| | || |||||||||||||   |||||||||||||| ||||||||||    
T  2362671 attgatctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcactt 2362751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 39131147 - 39131234
Alignment:
Q  11 gatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagttgtttgatgatgacattcttggtaatcttcaaggat 98  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||  |||||||||| |||||||| |||||||    
T  39131147 gatgaaagaagtttgatgttgctcccatgtgagctaactgatgaacttgagttgtctgactatgacattctaggtaatctgcaaggat 39131234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 357
Target Start/End: Original strand, 39216550 - 39216809
Alignment:
Q  98 tcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccaca 197  Q
    |||||||||||||||| | ||||||||||||| ||||||||||| | |||| ||  ||||||||  |||||| ||||||| ||||||| ||||  ||| |    
T  39216550 tcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattattgctgattaccata 39216649  T
Q  198 ttcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataag 297  Q
    ||  |  |||  |  |||||| |||||||||||   |||||||||||  ||||| |||||||||| ||| ||||||| ||||||||||| | || || ||    
T  39216650 tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag 39216749  T
Q  298 tcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    | |||| ||  |||||||   || | |||| |||||||| || ||| |||||||||||||    
T  39216750 tgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatgg 39216809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 39473084 - 39472959
Alignment:
Q  73 tgacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgat 172  Q
    ||||||||| | | |||| |||| ||||||||||||| ||||| ||||| |||||||||||| |||||||||||||  |  ||||||||  |||||| ||    
T  39473084 tgacattctagttgatctgcaagaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccat 39472985  T
Q  173 gctgtaattattgatgatagccacat 198  Q
    ||||| |||||||||| |||| ||||    
T  39472984 gctgtgattattgatggtagcaacat 39472959  T

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Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 284
Target Start/End: Complemental strand, 39396942 - 39396755
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 196  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||| ||||||  |  ||||||||  |||||| ||| |||  ||||||| |||||||||    
T  39396942 atcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggatagccac 39396843  T
Q  197 attcttc-tgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttga 284  Q
    | ||| | ||||  | ||||||| || |||||||| |  ||||| ||||  ||||| |||||||||| ||| |||||||| ||||||||    
T  39396842 a-tctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttga 39396755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 357
Target Start/End: Original strand, 39152928 - 39153211
Alignment:
Q  74 gacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatg 173  Q
    |||||||| | ||| || |||| ||||||||||||| ||||| |||| |||||||||||||||||||| ||||||  |  || |||||  |||||| |||    
T  39152928 gacattctagataacctgcaagaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatg 39153027  T
Q  174 ctgtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagc 273  Q
    |||| ||||| |||| ||||  |||  |||||||  |  |||||| || ||||||||   | |||||||||  ||||| |||||||||| |||  || ||    
T  39153028 ctgtgattatagatggtagctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgc 39153127  T
Q  274 acttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    || |||||||||||| || ||||   |||| || ||||||||   || | |||| |||||||||||  || |||| ||||||||    
T  39153128 acatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatgg 39153211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 357
Target Start/End: Complemental strand, 39380776 - 39380524
Alignment:
Q  105 atccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccacattcttct 204  Q
    ||||| ||||||||||||| ||||||||||| || ||||||| |  |  ||| ||||  |||||| ||||||| ||| || ||||||||| |||  ||||    
T  39380776 atccagcaaaagttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttct 39380677  T
Q  205 gctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaac 304  Q
    |||  |  |||||| || | ||||||   ||||| ||  |  ||||| |||||||||| ||| |||||||||||||||||||||  | |||||  | ||     
T  39380676 gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaat 39380577  T
Q  305 acagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    || ||| |||| | |||| |||| || |||||||| ||| |||||||||||||    
T  39380576 actgaagattctgtggcggttcttggatttctactgcttttgtcaatttatgg 39380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 291
Target Start/End: Original strand, 39371009 - 39371203
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 196  Q
    ||||||||||||||||| | ||||||||||||| ||||||||  | ||| ||  |  | ||||||  |||||| ||| ||||||||||| ||||  |||     
T  39371009 atcatcagatccatcaagatttgttttggatatgatacagaataccattgttccactgagtaagaagggagacaatgttgtaattattgctgattaccaa 39371108  T
Q  197 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagccaa 291  Q
    || || |||||  |  |||| | ||||||||||| | ||||| | |||  ||||| ||| |||||| ||| ||||||||||||| ||||||||||    
T  39371109 atcctgctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaa 39371203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 44624647 - 44624721
Alignment:
Q  73 tgacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattat 147  Q
    ||||||||||| |||| | | || ||||||||||||| ||||| |||||||||||||||||| |||||| |||||    
T  44624647 tgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccccattat 44624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 39196812 - 39196609
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattatt 184  Q
    |||||| |||| ||||||||||||||||||| |||||||||| || |||| |||||| || |||  | ||||  | |  |||||  |||||||  |||||    
T  39196812 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacagtgggaaaagggagataatgctgtggttatt 39196713  T
Q  185 gatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttga 284  Q
    | ||||  ||| ||   ||||||  |  |||||| || |||||||| |||||||||||||  ||| | | |||||||| ||| ||||||| |||||||||    
T  39196712 gttgattaccaaatctatctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttga 39196613  T
Q  285 aagc 288  Q
    ||||    
T  39196612 aagc 39196609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 39223594 - 39223650
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaaccc 141  Q
    |||||| |||| ||||||||||||||||||| |||||||||| || |||| ||||||    
T  39223594 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccc 39223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 44615298 - 44615335
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatac 134  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  44615298 atcatcagatccagcaaaacttgttttggatataatac 44615335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 39206044 - 39205988
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaaccc 141  Q
    |||||| |||| |||| |||||||||||||| |||||||||| || |||| ||||||    
T  39206044 taatctgcaagaatcagcagatccatcaaaacttgttttggaaatgatactgaaccc 39205988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 44895397 - 44895353
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaaccc 141  Q
    ||||||| ||||  ||||| |||||||||||||||||||||||||    
T  44895397 atcatcaaatcctgcaaaacttgttttggatataatacagaaccc 44895353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 357
Target Start/End: Original strand, 51575855 - 51576137
Alignment:
Q  72 atgacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacga 171  Q
    |||||||||| |  ||||||| || ||| |||||||||||||||| |||| ||||||||||||||||||  || |||  | | ||||||   |||||| |    
T  51575855 atgacattctagtcaatcttctagcatcctcagatccatcaaaagatgttctggatataatacagaaccacatcattccacattgtaag---ggagacaa 51575951  T
Q  172 tgctgtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggcta 271  Q
    || ||||| |||| ||| ||||||| || |||||||  |  |||| | || |||||||| | |||| |||||||||||| ||||||||||| |||  |||    
T  51575952 tgttgtaactattaatggtagccacgttgttctgcttgaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaacta 51576051  T
Q  272 gcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgg 357  Q
    |  ||  ||||||||||  | || ||| |||| || |||||||| | || | |||| |||| ||| ||||||||||||||||||||    
T  51576052 gtcctcaatttgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatgg 51576137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 276
Target Start/End: Original strand, 33152038 - 33152214
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 196  Q
    |||||||||||||||||||  |||||||||||| || |||||||| || |||  |  |||||||   |||||| |||||| |||||||||||||  ||||    
T  33152038 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaag---ggagacaatgctgcaattattgatgatttccac 33152134  T
Q  197 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagcact 276  Q
    |||  | ||||| |  |||||| || |||||||| | || |||||||||||||  ||||||| |||||||  ||||||||    
T  33152135 attgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgaatctagcact 33152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 288
Target Start/End: Original strand, 16114236 - 16114450
Alignment:
Q  74 gacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatg 173  Q
    |||||| ||| | |||| |||| |||| |||||||||||| | |||||||||||||||||||||||||   || |  |  ||||||||  |||||| |||    
T  16114236 gacatttttgtttatctgcaagaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatg 16114335  T
Q  174 ctgtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaggctagc 273  Q
    |||| |||||||||||  |||||||   |||| |  | ||||||| || ||| |||| |  ||||||||||| ||||| |||| ||||| ||| ||||||    
T  16114336 ctgtgattattgatgaatgccacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagc 16114435  T
Q  274 acttgatttgaaagc 288  Q
     |  |||||||||||    
T  16114436 gcgcgatttgaaagc 16114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 19808798 - 19808849
Alignment:
Q  97 atcatcagatccatcaaaagttgttttggatataatacagaacccgattatt 148  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  19808798 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattatt 19808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 19808934 - 19808986
Alignment:
Q  236 attaaacctcatgtaaaagaagaagcaatgaggctagcacttgatttgaaagc 288  Q
    |||||||||  ||||| ||||||| || ||| |||||||||||||||||||||    
T  19808934 attaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagc 19808986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 33562169 - 33562225
Alignment:
Q  85 taatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaaccc 141  Q
    |||||| |||| ||||||||||||||||||| |||||||||| || |||| ||||||    
T  33562169 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccc 33562225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 17060514 - 17060589
Alignment:
Q  73 tgacattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattatt 148  Q
    ||||||||| | |||| | |||| |||||| |||||||||||| ||||||||||| |||||  |||||| ||||||    
T  17060514 tgacattctagttaatttgcaagaatcatcggatccatcaaaaattgttttggatgtaataatgaaccccattatt 17060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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