View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_high_17 (Length: 332)
Name: NF17943_high_17
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_high_17 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 1726797 - 1727126
Alignment:
| Q |
1 |
aagaaactaatgaagaagaagccattatgactttgatggcttcaacaatttatgatgtagaatctgaagtagattatgatgatgatgatgaagtattttc |
100 |
Q |
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| T |
1726797 |
aagaaactaatgaagaagaagccaatatgactttgatggcttcaacaacttatgatgtagaatctgaagtagatgatgatgatgatgatgaagtattttc |
1726896 |
T |
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| Q |
101 |
taaactgactcgcgaagaggttgtcaattctatgtcgttgtcttatcaaatcataaaacttaannnnnnnnacaaaggaaatatgatttagtggcagagg |
200 |
Q |
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| T |
1726897 |
taaactgactcgcgaagaggttgtcaattctatgtcgttgtcttagcaaatcaaaaagtttaattttttttacaaaggaaatatgatttagtggcagagg |
1726996 |
T |
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| Q |
201 |
aatctaagactctgagtatatggaatgaaaatctcttgatgaggtaa-tctagagagatgtcaaatttcatatactcaagagaaagctgataaacctctg |
299 |
Q |
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| T |
1726997 |
aatctaagactctgagtatatggaatg---atctcttgatgaggtaattctagagaaatgtcaaatttcatatactcaagagaaagctgataaacctctg |
1727093 |
T |
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| Q |
300 |
aacaagcatgaaacaaaggagaatgaattagtt |
332 |
Q |
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| T |
1727094 |
aacaagcatgaaacaaagaagaatgaattagtt |
1727126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 15668581 - 15668676
Alignment:
| Q |
6 |
actaatgaagaagaagccattatgactttgatggcttcaacaatttatgatgtagaatctgaagtagattatgatgatgatgatgaagtattttct |
101 |
Q |
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| T |
15668581 |
actaatgaagaagaagccaatttggcattgatggcttcaacgacttctgatgtagaatctgaagttgattttcattctgatgataaattattttct |
15668676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 15668857 - 15668903
Alignment:
| Q |
265 |
tttcatatactcaagagaaagctgataaacctctgaacaagcatgaa |
311 |
Q |
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| T |
15668857 |
tttcatatactcagaaaaaagctgataaacctctgaacaagcatgaa |
15668903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 15668760 - 15668808
Alignment:
| Q |
172 |
acaaaggaaatatgatttagtggcagaggaatctaagactctgagtata |
220 |
Q |
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| T |
15668760 |
acaaaggcaatatgatttggtgacaaaggaatctaagactctgagtata |
15668808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 11450463 - 11450499
Alignment:
| Q |
75 |
tatgatgatgatgatgaagtattttctaaactgactc |
111 |
Q |
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| T |
11450463 |
tatgatgatgatgatgaggtattctctaaactgactc |
11450499 |
T |
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