View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17943_high_24 (Length: 254)
Name: NF17943_high_24
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 1857533 - 1857310
Alignment:
| Q |
23 |
ttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcg |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857533 |
ttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcg |
1857434 |
T |
|
| Q |
123 |
ccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
1857433 |
ccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatag |
1857334 |
T |
|
| Q |
223 |
aaaatgcatagcaagacttcttct |
246 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1857333 |
aaaatgcatagcaagacttcttct |
1857310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 1869135 - 1868908
Alignment:
| Q |
19 |
atcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869135 |
atcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacac |
1869036 |
T |
|
| Q |
119 |
ttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
1869035 |
ttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatcaag |
1868936 |
T |
|
| Q |
219 |
atagaaaatgcatagcaagacttcttct |
246 |
Q |
| |
|
|||| |||||||| |||||||||||||| |
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|
| T |
1868935 |
atagtaaatgcattgcaagacttcttct |
1868908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 1843522 - 1843298
Alignment:
| Q |
23 |
ttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1843522 |
ttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcg |
1843423 |
T |
|
| Q |
123 |
ccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
1843422 |
ccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatag |
1843323 |
T |
|
| Q |
223 |
aaaatgcatagcaagacttcttctc |
247 |
Q |
| |
|
|||| ||| ||||||||||||||| |
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|
| T |
1843322 |
taaattcattgcaagacttcttctc |
1843298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 1815509 - 1815735
Alignment:
| Q |
21 |
cattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacactt |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |
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|
| T |
1815509 |
cattgatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagtt |
1815608 |
T |
|
| Q |
121 |
cgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagat |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
1815609 |
cgccgcaagaacagccacctccatgatcacttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagat |
1815708 |
T |
|
| Q |
221 |
agaaaatgcatagcaagacttcttctc |
247 |
Q |
| |
|
| ||| ||| ||||||||||||||||| |
|
|
| T |
1815709 |
aaaaagtgcgtagcaagacttcttctc |
1815735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
43 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
142 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||| |
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|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
143 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
240 |
Q |
| |
|
|| ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | ||| | ||| |||||||| | ||| |||||||||||||| |
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|
| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 9170179 - 9170376
Alignment:
| Q |
43 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
142 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||| ||| |||||| |
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|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
| Q |
143 |
ttgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
240 |
Q |
| |
|
|| ||||||| ||||| || || || |||||| ||| |||||||| ||||||| | |||| | ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
9170279 |
ttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
43 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
142 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||| |
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|
| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
143 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
240 |
Q |
| |
|
|| ||||||| |||||||| |||| | | | ||| |||||||| | ||||| | |||| | ||| |||||||| | ||| |||||||||||||| |
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|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 240
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
45 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcctt |
144 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||||| |
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|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
145 |
gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaaaatgcatagcaagact |
240 |
Q |
| |
|
||||||| ||||| || |||||| | | ||| |||||||| ||||||| | |||| | ||| |||||||| | || |||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 9229131 - 9229325
Alignment:
| Q |
27 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
126 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
127 |
aagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagata |
221 |
Q |
| |
|
||||| ||| || ||||| ||||| | ||||| || |||||| | | |||| |||||| ||||||| |||||| ||| | | | |||||||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacatgattctctcttaaacaagata |
9229325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 9218262 - 9218387
Alignment:
| Q |
43 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
142 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| || |||||| |
|
|
| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
143 |
ttgatctcttgtttgttttcttcatt |
168 |
Q |
| |
|
|| ||||||| |||||||| ||||| |
|
|
| T |
9218362 |
ttaatctctttcttgttttcatcatt |
9218387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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