View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_high_31 (Length: 236)
Name: NF17943_high_31
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_high_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 28397896 - 28398116
Alignment:
| Q |
16 |
tattcatcccatagcggtgtcaacattctaatcaaaactaactaagatctatgtgaagataattgattcatgatctactatttgtgaatggcttctttgg |
115 |
Q |
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| T |
28397896 |
tattcatcccatagcggtgtcaacattctaatcaaaactaactaagatctatgtgaagataatttattcatgatgtactatttgtgaatggcttctttgg |
28397995 |
T |
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| Q |
116 |
actgacctatacccaatgacacctcattctaaacactctagtcacctcaatcatataccgacttgagcataatgtttgcatgtacatccctactattaga |
215 |
Q |
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| T |
28397996 |
actgacctatacccaataccacctcattctaaaccctctagtcacctcaatcatataccgacttgagcataatgtttgcatgtacatccctactattaga |
28398095 |
T |
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| Q |
216 |
catcatctgtattatggattc |
236 |
Q |
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|||||| ||| ||| |||||| |
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| T |
28398096 |
catcatttgtgttagggattc |
28398116 |
T |
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