View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_high_32 (Length: 230)
Name: NF17943_high_32
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 42212566 - 42212783
Alignment:
| Q |
16 |
atgaatatgttattagctcggtaagttcatctaattatgcagatttactgagtattgatcatcaatttgtgaattttttgttttggtagaatcataagac |
115 |
Q |
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| T |
42212566 |
atgaatatgttattagctcggtaagttcatctaattatgcagatctactgagtattgatcatcaatttgtgaattttttgttttggtagaatcatacgac |
42212665 |
T |
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| Q |
116 |
gaattctatttatcggtacctagttttaagtacaaaaagcatcacat-----------------ataatcaataaatatgtgtgaataaatagatagtaa |
198 |
Q |
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| T |
42212666 |
gaattctatttattggtacctagttttaagtacaaaaagcatcacatataagataggatatgacataatcaataaatatgtgtgaataaatagatagtaa |
42212765 |
T |
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| Q |
199 |
aaaccataggtgaatttg |
216 |
Q |
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|||||||||||||||||| |
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| T |
42212766 |
aaaccataggtgaatttg |
42212783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 42205379 - 42205525
Alignment:
| Q |
16 |
atgaatatgttattagctcggtaagttcatctaattatgcagatttactgagtattgatcatcaatttgtgaatt-ttttgttttg-gtagaatcataag |
113 |
Q |
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|||||||||||||||||||||| || |||||| || ||| || ||||||| |||||||||||||||||||||| |||||||||| || ||| |||| |
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| T |
42205379 |
atgaatatgttattagctcggtgagctcatct---tacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaag |
42205475 |
T |
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| Q |
114 |
acgaattctatttatcggtacctagttttaagtacaaaaagcatcacatataa |
166 |
Q |
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| T |
42205476 |
aggaattttattt---ggtaccaagttttaagtacaaaaagtatcacatataa |
42205525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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