View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_high_33 (Length: 228)

Name: NF17943_high_33
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_high_33
NF17943_high_33
[»] chr2 (17 HSPs)
chr2 (1-222)||(42846984-42847205)
chr2 (41-228)||(43370715-43370905)
chr2 (80-228)||(43377277-43377426)
chr2 (41-228)||(1779141-1779331)
chr2 (41-228)||(2110261-2110451)
chr2 (41-228)||(4828158-4828348)
chr2 (41-228)||(28585752-28585942)
chr2 (45-228)||(29194033-29194219)
chr2 (41-191)||(39646435-39646585)
chr2 (41-171)||(45080547-45080677)
chr2 (41-228)||(8381385-8381575)
chr2 (145-228)||(16970301-16970385)
chr2 (46-133)||(16964862-16964949)
chr2 (128-228)||(31921690-31921791)
chr2 (112-224)||(9370486-9370601)
chr2 (172-228)||(39646375-39646431)
chr2 (44-107)||(31922032-31922095)
[»] chr6 (13 HSPs)
chr6 (4-228)||(1870538-1870763)
chr6 (41-228)||(30736460-30736650)
chr6 (41-228)||(7271147-7271337)
chr6 (46-228)||(13210390-13210572)
chr6 (41-228)||(1241150-1241339)
chr6 (41-228)||(13042013-13042202)
chr6 (41-228)||(29182632-29182822)
chr6 (41-228)||(28541656-28541846)
chr6 (41-225)||(16435820-16436007)
chr6 (41-228)||(12350313-12350503)
chr6 (41-228)||(31013564-31013754)
chr6 (135-228)||(31833660-31833751)
chr6 (41-118)||(31833747-31833824)
[»] chr7 (14 HSPs)
chr7 (41-228)||(48838101-48838289)
chr7 (41-220)||(21442877-21443057)
chr7 (41-228)||(6392312-6392502)
chr7 (41-228)||(29737446-29737636)
chr7 (41-228)||(38276614-38276804)
chr7 (41-228)||(40232184-40232374)
chr7 (41-228)||(4040988-4041178)
chr7 (41-228)||(25943716-25943904)
chr7 (41-228)||(41427717-41427907)
chr7 (41-228)||(27596155-27596344)
chr7 (41-171)||(24300273-24300403)
chr7 (45-228)||(31689422-31689608)
chr7 (128-228)||(22338098-22338199)
chr7 (128-228)||(22619880-22619981)
[»] chr4 (22 HSPs)
chr4 (61-228)||(28910227-28910395)
chr4 (41-228)||(46870648-46870836)
chr4 (41-224)||(3172093-3172278)
chr4 (41-228)||(32218006-32218196)
chr4 (41-228)||(40071518-40071708)
chr4 (41-228)||(21240367-21240557)
chr4 (41-228)||(37064822-37065012)
chr4 (41-228)||(39788034-39788224)
chr4 (41-228)||(54438226-54438416)
chr4 (41-216)||(925217-925395)
chr4 (42-225)||(41555504-41555687)
chr4 (41-228)||(47199527-47199717)
chr4 (41-228)||(53509711-53509901)
chr4 (41-228)||(17493794-17493984)
chr4 (41-228)||(20789714-20789903)
chr4 (41-228)||(34408726-34408916)
chr4 (60-228)||(52101108-52101279)
chr4 (53-227)||(33800853-33801029)
chr4 (128-215)||(28689745-28689832)
chr4 (41-119)||(51744665-51744743)
chr4 (42-107)||(10441186-10441251)
chr4 (177-226)||(51744590-51744639)
[»] chr1 (14 HSPs)
chr1 (41-228)||(40562505-40562693)
chr1 (61-228)||(9129470-9129641)
chr1 (41-214)||(38817815-38817988)
chr1 (41-228)||(46370968-46371152)
chr1 (41-228)||(39150966-39151156)
chr1 (41-228)||(46862597-46862787)
chr1 (41-228)||(28036769-28036960)
chr1 (41-228)||(38321686-38321876)
chr1 (41-228)||(50777038-50777228)
chr1 (41-228)||(32045874-32046064)
chr1 (41-216)||(8229104-8229282)
chr1 (53-228)||(1207521-1207697)
chr1 (41-228)||(1929286-1929475)
chr1 (64-133)||(47603740-47603809)
[»] chr8 (11 HSPs)
chr8 (41-228)||(9753811-9754000)
chr8 (45-228)||(13243616-13243801)
chr8 (41-228)||(12738435-12738625)
chr8 (41-228)||(17336039-17336229)
chr8 (41-228)||(27820814-27821004)
chr8 (41-228)||(17493567-17493757)
chr8 (44-228)||(18575072-18575259)
chr8 (44-228)||(11254544-11254731)
chr8 (41-228)||(39906951-39907139)
chr8 (41-228)||(38069964-38070154)
chr8 (128-228)||(11147779-11147880)
[»] chr5 (6 HSPs)
chr5 (41-228)||(2970735-2970923)
chr5 (41-228)||(42897443-42897633)
chr5 (41-228)||(14044097-14044286)
chr5 (41-228)||(36982227-36982417)
chr5 (128-228)||(36767945-36768046)
chr5 (128-228)||(33404359-33404460)
[»] scaffold1194 (1 HSPs)
scaffold1194 (41-228)||(1020-1199)
[»] scaffold0061 (1 HSPs)
scaffold0061 (41-228)||(10086-10276)
[»] chr3 (12 HSPs)
chr3 (41-228)||(40496814-40497004)
chr3 (41-228)||(50676516-50676704)
chr3 (41-228)||(51545703-51545893)
chr3 (53-228)||(48737579-48737757)
chr3 (41-228)||(54014278-54014468)
chr3 (41-216)||(41346088-41346266)
chr3 (41-228)||(48169765-48169955)
chr3 (41-228)||(24709051-24709241)
chr3 (41-139)||(12568169-12568267)
chr3 (41-139)||(13544633-13544731)
chr3 (128-228)||(30462798-30462899)
chr3 (145-228)||(13542861-13542947)
[»] scaffold0047 (1 HSPs)
scaffold0047 (41-228)||(69794-69984)
[»] scaffold0519 (1 HSPs)
scaffold0519 (44-228)||(10662-10849)
[»] scaffold0532 (1 HSPs)
scaffold0532 (41-171)||(3855-3985)
[»] scaffold0318 (1 HSPs)
scaffold0318 (41-171)||(16398-16528)
[»] scaffold0016 (1 HSPs)
scaffold0016 (124-228)||(92238-92345)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42847205 - 42846984
Alignment:
Q  1 ctacctccctcctttaatatttgacctatttgnnnnnnnntatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttacta 100  Q
    |||||||| |||||||||||||||||||||||        ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||      
T  42847205 ctacctccgtcctttaatatttgacctatttgaaaaaaa-tatttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttaccc 42847107  T
Q  101 cttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggaca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  42847106 cttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaaataatcattacttaaaagtgaagatttcaaaataataacaaggaca 42847007  T
Q  200 atttagtaaaaatatcattctct 222  Q
    |||||||||||||||||||||||    
T  42847006 atttagtaaaaatatcattctct 42846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 43370715 - 43370905
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  43370715 tatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 43370814  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  43370815 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 43370905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 43377426 - 43377277
Alignment:
Q  80 cagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggt 178  Q
    ||||||||||||||||||   ||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  43377426 cagaatttgacaaatttatctcttataaatactttttgtagtctccaagtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaggt 43377327  T
Q  179 ttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||| |||||| ||||||| ||||||| |||||||||    
T  43377326 ttcaaaataataacaagtacaattcagtaaaagtatcattttctttcttt 43377277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 1779331 - 1779141
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||| | ||| |||||||||||| |||||||||||| ||| ||||||   |||||||||||||||||| || |||||| ||||||||||    
T  1779331 tatttgtcccacaatgcctgatcttctcagatttctaagcagaatttaacagatttaccctttataaatactttttgtggtccccatgttaaagtttgta 1779232  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||| |||||||||||||||||||||||| ||  || ||||||||||||| |||| ||||||| ||||||||||||||| |||||||||    
T  1779231 gtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaattcagtaaaaatatcattatctttcttt 1779141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 2110261 - 2110451
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||| |||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  2110261 tatttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 2110360  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| |||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  2110361 gtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 2110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 4828348 - 4828158
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||  ||||||||||| |||| |||||| ||||||||||||||||  ||||||||||||||||||| || |||||| ||||||| ||    
T  4828348 tatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataaatactttttgtggtccccatgttaaagtttata 4828249  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| ||| |||||||    
T  4828248 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttcttt 4828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 28585942 - 28585752
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||| ||||||||||| | |||||||||||||| |||||| ||||||||| ||||||   |||||||||||||||||| || |||||| ||||||||||    
T  28585942 tatttatcccacaatacttaaccttctcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccatgttaaagtttgta 28585843  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  28585842 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 28585752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 29194033 - 29194219
Alignment:
Q  45 tgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatgg 144  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || | |||| |||||||||| |||    
T  29194033 tgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcccgatgttaaagtttgtagtgg 29194132  T
Q  145 aacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    |||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  29194133 aacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 29194219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 39646585 - 39646435
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||  |||| ||||||||||| |||  ||||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||    
T  39646585 tatttgtcccacaatatttgacattctcagatttctaaatagaatttgacaaatttaccccttataaatactttttgtggtcctcatgtaaaagtttgta 39646486  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataa 191  Q
     ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  39646485 gtggaacaaa-aaagtaatcattacttaaaagtgaaggtttcaaaataataa 39646435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 45080677 - 45080547
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  45080677 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 45080578  T
Q  141 atggaacaaagaaagtaatcattacttaaaa 171  Q
     ||||||||||||| ||||||||||||||||    
T  45080577 gtggaacaaagaaaataatcattacttaaaa 45080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 8381575 - 8381385
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    |||||||||||| |||| ||||||||||| |||| |||  | ||||||||| ||||||  ||||||||||||||||||| ||| ||||| ||| ||||||    
T  8381575 tatttgtcccacgatacttgaccttctcaaatttctaaataaaatttgacagatttaccccttataaatactttttgtggtcttcatgttaaaatttgta 8381476  T
Q  141 atggaacaaagaaagtaatcattactt-aaaatg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||| ||||||  || ||||||||||||| |||||| ||| | ||||||| ||||| ||| |||||||    
T  8381475 gtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctatttcttt 8381385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 16970301 - 16970385
Alignment:
Q  145 aacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||||| |||||||||    
T  16970301 aacaaagaaagtaatcattacttaaaagtgaaggtttaaaaataataataagggcaattcagtaaaaatatcattatctttcttt 16970385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 16964862 - 16964949
Alignment:
Q  46 gtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaa 133  Q
    |||||||||||| ||||||||||| ||||||||| | |||||||||| |||||  ||||||||||||||||||| |||||||||||||    
T  16964862 gtcccacaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataaatactttttgtggtctccatgtaaaa 16964949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 31921791 - 31921690
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||| ||||| ||||||||  |||||||| |||| |||||| ||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||    
T  31921791 gtaaaagcttgtagtggaacaattaaagtaattattatttaaaagtgaaggtttaaaaataataataagggcaatttagtaaaaatatcactctctttct 31921692  T
Q  227 tt 228  Q
    ||    
T  31921691 tt 31921690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 9370486 - 9370601
Alignment:
Q  112 tttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaa 208  Q
    |||||||| || |||| | |||||||||| || ||||||||||||||||||||||||||| ||  || ||||||||||||| |||||||||||| |||||    
T  9370486 tttttgtgatccccatattaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaa 9370585  T
Q  209 aaatatcattctcttt 224  Q
    ||| |||||| |||||    
T  9370586 aaaaatcattttcttt 9370601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 39646431 - 39646375
Alignment:
Q  172 tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  39646431 tgaaggtttcaaaataataacaagggcaattcagtaaaaatatcattctctttcttt 39646375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 31922095 - 31922032
Alignment:
Q  44 ttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataa 107  Q
    |||||||| ||||| ||||||||||| ||||| ||||| |||||||||| |||||  |||||||    
T  31922095 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 31922032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 1870538 - 1870763
Alignment:
Q  4 cctccctcctttaatatttgacctatttgnnnnnnnntatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactactt 103  Q
    ||||| ||| |||||| ||||||||||||        ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  1870538 cctccgtcccttaatacttgacctatttggaaaaaaatatttgttcaacaatacttgaccttctcagatttttaagcagaatttgacaaatttacccctt 1870637  T
Q  104 ataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatt 202  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  1870638 ataaatactttttgtgatctccatgtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaggcttcaaaataataacaagggcaatt 1870737  T
Q  203 tagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||| ||||||||    
T  1870738 tagtaaaaatatcattccctttcttt 1870763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 30736460 - 30736650
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||  ||| |||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||  || |||||| ||||||||||    
T  30736460 tatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtaatccccatgttaaagtttgta 30736559  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
      ||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  30736560 gaggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaaaaatatcattctctttcttt 30736650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 7271337 - 7271147
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||||| |||||| |||||||||||||||| ||||||  ||||||||||||||||||  || |||||| ||||||||||    
T  7271337 tatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgttgtccccatgttaaagtttgta 7271238  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||| |||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||||| ||||||||||||||||| |||||||    
T  7271237 gtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattctatttcttt 7271147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 13210390 - 13210572
Alignment:
Q  46 gtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatgga 145  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||   ||||||||| |||||||| |||||||||||||||||||| ||||    
T  13210390 gtccctcaatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataaatattttttgtggtctccatgtaaaagtttgtagtgga 13210489  T
Q  146 acaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||  |||||||||| |||| |||||||||| ||||||||| | ||| |||||||  ||||||||||||||||    
T  13210490 acaaagaaagtaattcttacttaaaagtgaaagtttcaaaat-ataacaagggcgattcagtaaaataatcattctctttcttt 13210572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 1241150 - 1241339
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||| |||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||| | |||||||| |    
T  1241150 tatttgtcccacaatacttgaacttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgtggtccccatattaaagtttgca 1241249  T
Q  141 atggaacaaagaaagtaatcattacttaaaatg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||| | ||||||| ||||| | |||||||||    
T  1241250 gtggaacaaagaaagtaatcattacttaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttctttcttt 1241339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 13042013 - 13042202
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||| || | |||| ||||||||||    
T  13042013 tatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtccctatgttaaagtttgta 13042112  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg-aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||||||| || ||  |||  ||||||| |||||| ||| | ||||||||||||| |||||||||||    
T  13042113 gtggaacaaagaaaataatcattacttaaaagtgaaaattttttaaataatgacaagggcaactcagtaaaaatatcactctctttcttt 13042202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 29182632 - 29182822
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||| ||||||| |||||||||||||||| || ||| ||||||||| ||||||  ||||||||||| ||||||| || | |||| ||||||||||    
T  29182632 tatttgtcctacaatacttgaccttctcagatttctaggcaaaatttgacagatttacctcttataaatacattttgtggtccctatgttaaagtttgta 29182731  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||||||||| |||||||||||    
T  29182732 gtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaatatcactctctttcttt 29182822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 28541846 - 28541656
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||| ||||||||||| |||||||||||||||| || ||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  28541846 tatttatcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 28541747  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| ||| |||||||||||||||| ||  || ||||||||||||| |||||| |||   ||||||| ||||| |||||||||||    
T  28541746 gtggaacaaaaaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttcttt 28541656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 16435820 - 16436007
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgt-gttctccatgtaaaagtttgt 139  Q
    ||||||||||||||||| ||||||||||| |||| |||| | ||||||||| ||||||  | |||||||||||||||| ||||| ||||| |||||||||    
T  16435820 tatttgtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttaccccatataaatactttttgtggttct-catgttaaagtttgt 16435918  T
Q  140 aatggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttc 225  Q
    | |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| | ||||||    
T  16435919 agtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttctttc 16436007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 12350313 - 12350503
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||  ||||||||||| |||| |||||| ||||||||| ||||||  |||||| |||||||||||| ||  ||||| ||||||||||    
T  12350313 tatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttaccccttatatatactttttgtggtcctcatgttaaagtttgta 12350412  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |  ||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | |||||||  |||| |||||||||||    
T  12350413 gtaaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagcatcactctctttcttt 12350503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 31013754 - 31013564
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||||||  |||||   |||||||||| ||||||||  | |||| | ||||||||||    
T  31013754 tatttgttccacaatacttgatcttctcagatttctaagcagaatttgacggatttatcccttataaatattttttgtggcccccatattaaagtttgta 31013655  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     | ||||||||||| |||||||||||||||| ||  || ||||||||||||| | |||| ||||| ||||||||||||||| |||||||||    
T  31013654 gtagaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgataagggcaattcagtaaaaatatcattatctttcttt 31013564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 31833751 - 31833660
Alignment:
Q  135 tttgtaatggaacaaagaaagtaatcattactt-aaaatgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||   |||| ||||||||||||||||||||| | |||||||    
T  31833751 tttgtagtggaacaaagaaaataatcattacttaaaaatgaaggtttcaaaataat---aagggcaatttagtaaaaatatcattatttttcttt 31833660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 31833824 - 31833747
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgt 118  Q
    |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||   |||| |||||||||||||    
T  31833824 tatttgtcccacgatacttgaccttctcagatttttaagcataatttgacaaatttatcccttaaaaatactttttgt 31833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 48838101 - 48838289
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||    
T  48838101 tatttgtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtctccatgtaaaagtgtgta 48838200  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  48838201 gtggaacaaagaaagtaatcattacttaaaagtgaaagttttaaaataataacaaggacaatttagtaaaaatatcattttctttcttt 48838289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 21443057 - 21442877
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||| |||||||||||||||||| |    
T  21443057 tatttgtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatcccttataaatactttttgtggtctccatgtaaaagtttgca 21442958  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattct 220  Q
     ||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21442957 gtggaataaagaaagtaaccattacttaaaagtgaaagtttcaaaataataacaagggcaatttagtaaaaatatcattct 21442877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 6392312 - 6392502
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| | |||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  6392312 tatttgtcccacaatactttaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 6392411  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| ||||||||| ||||| |||||||||||    
T  6392412 gtggaacaaagaaattaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttcttt 6392502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 29737446 - 29737636
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  29737446 tatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 29737545  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  29737546 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 29737636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 38276804 - 38276614
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||||||  ||||||||||||||||||| ||  ||| | ||||||||||    
T  38276804 tatttgtcccacaatacttgaccttttcatatttctaagcagaatttgacagatttaccccttataaatactttttgtggtcctcatattaaagtttgta 38276705  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||    
T  38276704 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaacatcattctctttcttt 38276614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 40232374 - 40232184
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  40232374 tatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 40232275  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  40232274 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 40232184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 4040988 - 4041178
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||  ||||||  ||||||||||||| ||||| || |||||| ||||||||||    
T  4040988 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttaccccttataaatacttgttgtggtccccatgttaaagtttgta 4041087  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||||||| | ||||||| ||||| || ||||||||    
T  4041088 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactccctttcttt 4041178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 25943904 - 25943716
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  |||||||||||  ||| || || |||||| ||||||||||    
T  25943904 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatac--tttatggtccccatgttaaagtttgta 25943807  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||| | ||||| ||||||| ||||| |||||||||||    
T  25943806 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaatggcaattcagtaaaagtatcactctctttcttt 25943716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 41427907 - 41427717
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||  ||| |||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  41427907 tatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 41427808  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     || ||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||||| | ||||| ||| | |||||||||||    
T  41427807 gtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcaataaaagtattactctctttcttt 41427717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 27596344 - 27596155
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| || ||| ||||||||| ||||||   |||||||||||||||||| || |||||| ||||||||||    
T  27596344 tatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccctttataaatactttttgtggtc-ccatgttaaagtttgta 27596246  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     || |||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| |||   ||||||| ||||| |||||||||||    
T  27596245 gtgaaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttcttt 27596155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 24300403 - 24300273
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||| ||| |||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  24300403 tatttgtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 24300304  T
Q  141 atggaacaaagaaagtaatcattacttaaaa 171  Q
     || |||||||||||||||||||||||||||    
T  24300303 gtgaaacaaagaaagtaatcattacttaaaa 24300273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 31689608 - 31689422
Alignment:
Q  45 tgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatgg 144  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  |||||| |||||||||||| ||  ||||| ||||||| || ||     
T  31689608 tgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttatatatactttttgtggtcctcatgttaaagtttatagtga 31689509  T
Q  145 aacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    |||||||||||||||||||  |||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  31689508 aacaaagaaagtaatcattttttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 31689422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 22338098 - 22338199
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||||||||| ||||| |   |||||||| |||| |||||| ||||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  22338098 gtaaaagtttgtagtggaatatttaaagtaattattatttaaaagtgaaggtttaaaaataataataagggcaattcagtaaaaatatcactctctttct 22338197  T
Q  227 tt 228  Q
    ||    
T  22338198 tt 22338199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 22619880 - 22619981
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||||||||| ||||||||  |||||||| |||| |||||| ||||||||| |||||||||| || | ||||| | ||||||||||| |||||||||    
T  22619880 gtaaaagtttgtagtggaacaattaaagtaattattatttaaaagtgaaggtttaaaaataataataaaggcaattcaataaaaatatcactctctttct 22619979  T
Q  227 tt 228  Q
    ||    
T  22619980 tt 22619981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 28910395 - 28910227
Alignment:
Q  61 accttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatc 160  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||    
T  28910395 accttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtttccatgtaaaagtttctagtggaacaaagaaagtaatc 28910296  T
Q  161 attacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28910295 attacttaaaagtgaaggtttcaaaataataacaaggacaattcagtaaaaatatcattctctttcttt 28910227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 46870648 - 46870836
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||   ||||||||||||||||||| || |||||||||||||||||    
T  46870648 tatttgtcccacaatacttgacctgctcagatttttaagtacaatttgacaaatttatcccttataaatactttttgtggtccccatgtaaaagtttgta 46870747  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  46870748 gtggaacaaagaaagtcatcattacttaaaagtgaaggtttcaaaataataacaaggactattcagtaaaaatatcattctctttcttt 46870836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 3172278 - 3172093
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||   |||||||||||||||||| |||| |||||||||||||||    
T  3172278 tatttgtcccacaatacttgactttctcaaatttctaagcagaatttgacaaatttaccttttataaatactttttgtggtctcaatgtaaaagtttgta 3172179  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataa-taacaaggacaatttagtaaaaatatcattctcttt 224  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  3172178 gtggaacaaagaaagtaatcattacttaaaagtgaaggtttcaaaataattaacaaggacaattcagtaaaaatatcattatcttt 3172093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 32218196 - 32218006
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||| | ||||| |||  |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |  |||||| ||||||||||    
T  32218196 tatttgtcctataatacttgattttctcagatttttaagcagaatttgacagatttaccccttataaatactttttgtggttcccatgttaaagtttgta 32218097  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||||| ||| ||||||||||| |||||||||||||    
T  32218096 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggactattcagtaaaaatataattctctttcttt 32218006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 40071708 - 40071518
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  40071708 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 40071609  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||| ||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  40071608 gtggaacaaagaaagtaatcattgcttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 40071518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 21240367 - 21240557
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||||||||| || |||| ||||||||||| ||||||  | ||||||||||||||||| || |||||| ||||||||||    
T  21240367 tatttgtcccataatacttgaccttctcagacttctaagtagaatttgacagatttaccccatataaatactttttgtggtccccatgttaaagtttgta 21240466  T
Q  141 atggaacaaagaaagtaatcattactt-aaaatg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||| ||||||  || ||||||||||| | |||| | ||||| |||||||||||||||||||||||||    
T  21240467 gtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaatagtgacaatgtcaattcagtaaaaatatcattctctttcttt 21240557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 37065012 - 37064822
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| ||  ||||| ||||||||||    
T  37065012 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttaccccttataaatactttttgtggtcctcatgttaaagtttgta 37064913  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||| ||| |||||| ||| | ||||||| ||||| |||||||||||    
T  37064912 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaaaaatgacaagggcaactcagtaaaagtatcactctctttcttt 37064822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 39788034 - 39788224
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||| ||||||||| ||||||| |||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  39788034 tatttgttccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 39788133  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  39788134 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 39788224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 54438416 - 54438226
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||| |||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  54438416 tatttgtcccacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 54438317  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || |||| |||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  54438316 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 54438226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 925395 - 925217
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||| ||| ||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  925395 tatttatcctacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 925296  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatca 216  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| |||||    
T  925295 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatca 925217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 41555504 - 41555687
Alignment:
Q  42 atttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaa 141  Q
    ||||||||| |||||  ||||||||||| ||||||||||  |||||||||| |||||  ||||||  ||||||||||| |||| |||||||||||||||     
T  41555504 atttgtcccgcaataattgaccttctcaaatttttaagcttaatttgacaagtttaccccttatagttactttttgtggtctctatgtaaaagtttgtag 41555603  T
Q  142 tggaacaaagaaagtaatcattacttaaaa---tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttc 225  Q
    || |||||||||||||||||||||||||||   ||||||||| ||||||||   || ||||||| ||||||||||||||||||||||    
T  41555604 tgaaacaaagaaagtaatcattacttaaaaaagtgaaggtttaaaaataat---aatgacaattcagtaaaaatatcattctctttc 41555687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 47199527 - 47199717
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| || ||| ||||| ||| ||||||  | ||||||||||||||||| || |||||| ||||||||||    
T  47199527 tatttgtcccacaatacttgaccttctcagatttctaggcaaaatttaacagatttaccccatataaatactttttgtggtccccatgttaaagtttgta 47199626  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||||||| ||  || |||| |||||||| |||||| ||| | | ||||||||||| |||||||||||    
T  47199627 gtggaacaaagaaaataatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcaataaaaatatcactctctttcttt 47199717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 53509901 - 53509711
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||| ||||||||  ||||||| |||||||| |||| ||||||||||| ||||| | ||||||||||||||||||| || |||||| ||| ||||||    
T  53509901 tatttgttccacaatatttgaccttatcagatttctaaggagaatttgacatatttattccttataaatactttttgtgatccccatgttaaaatttgta 53509802  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| ||||||||| |||||| ||  || ||||||||||||| |||| ||||||| ||||| ||||||||||| |||||||    
T  53509801 gtggaacaaagaaaataatcattatttaaaagtgaaaaagtttcaaaataatgacaatgacaattcagtaacaatatcattctttttcttt 53509711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 17493794 - 17493984
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    |||||||| |||||||| ||| |||||||||||| |||||| ||||||||| ||||||  |||||||| |||||||||| || |||||| ||||||||||    
T  17493794 tatttgtctcacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaaaactttttgtggtccccatgttaaagtttgta 17493893  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||| ||||||||||| ||  || ||||||||||||| |||||| ||| | | ||||| ||||| |||||||||||    
T  17493894 gtggaacaaagaaaataattattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcactctctttcttt 17493984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 20789714 - 20789903
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||| |||||||||||| |||| | ||||||||| |||||   ||||||||||||||||||| || |||||| ||||||||||    
T  20789714 tatttgtcccataatacttgatcttctcagatttctaagtaaaatttgacagatttatcccttataaatactttttgtggtccccatgttaaagtttgta 20789813  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||  | ||||||| ||||| |||||||||||    
T  20789814 gtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg-cagctcagtaaaagtatcactctctttcttt 20789903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 34408916 - 34408726
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| |||||||||||||||| || | | ||||||||| ||||||  ||||||||||||||||||| ||  ||||| ||||||||||    
T  34408916 tatttgtcccataatacttgaccttctcagatttctaggtaaaatttgacagatttaccccttataaatactttttgtggtccacatgttaaagtttgta 34408817  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |  |||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | | ||||| |||||||||||||||||    
T  34408816 gtataacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcattctctttcttt 34408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 52101108 - 52101279
Alignment:
Q  60 gaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaat 159  Q
    ||||||||||||||| |||||| ||||||||| ||||||   |||||||||||||||||| |  |||||| |||||||||| ||||||||||||| |||     
T  52101108 gaccttctcagatttataagcaaaatttgacagatttaccctttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaagaaaataac 52101207  T
Q  160 cattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    |||||||||||| ||  ||  |||||||||||| |||||  ||||| ||||||||||||||| | |||||||    
T  52101208 cattacttaaaagtgaaaaaatttcaaaataatgacaagtgcaattcagtaaaaatatcattatatttcttt 52101279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 33801029 - 33800853
Alignment:
Q  53 aatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaaga 152  Q
    ||||| |||||||||||||||| |||| | ||||||||| ||||||  ||||||||||||||| ||| || |||| | |||||||||| |||||||||||    
T  33801029 aatacttgaccttctcagatttctaagtaaaatttgacagatttacctcttataaatactttt-gtggtccccatattaaagtttgtagtggaacaaaga 33800931  T
Q  153 aagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttctt 227  Q
    |||||||||||| |||||| ||  || |||||||||| || |||||| ||| | ||||||| ||||| ||||||||||    
T  33800930 aagtaatcattatttaaaagtgaaaaagtttcaaaatgatgacaagggcaactcagtaaaagtatcactctctttctt 33800853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 28689832 - 28689745
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaatgaaggtttcaaaataataacaaggacaatttagtaaaaatatc 215  Q
    ||||||||||||| ||||||||  |||||||| |||| ||||||||||||||| |||||||||| |||| ||||| ||||||||||||    
T  28689832 gtaaaagtttgtagtggaacaattaaagtaattattatttaaaatgaaggtttaaaaataataataagggcaattcagtaaaaatatc 28689745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 51744743 - 51744665
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtg 119  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||  |||||||||||||||||||    
T  51744743 tatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaatactttttgtg 51744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 10441186 - 10441251
Alignment:
Q  42 atttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataa 107  Q
    |||||||||| ||||| ||||||||||| ||||| ||||| |||||||||| |||||  |||||||    
T  10441186 atttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacctcttataa 10441251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 51744639 - 51744590
Alignment:
Q  177 gtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||||||||| |||||| ||| ||||||||| ||||| |||||||||    
T  51744639 gtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttct 51744590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 40562693 - 40562505
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||  |||||||||||| |||||| ||||||||||||||||||||    
T  40562693 tatttgtcccacaatacttgacattctcatatttttaagcagaatttgataaatttaccccttataaatactctttgtggtctccatgtaaaagtttgta 40562594  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     | |||||||||||||||||||||||||||| | || |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  40562593 gtagaacaaagaaagtaatcattacttaaaagtaaaagtttcaaaataataacaagggcaattcagtaaaaatatcattctctttcttt 40562505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 9129641 - 9129470
Alignment:
Q  61 accttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaagtaatc 160  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  9129641 accttctcagatttttaagcagaatttgataaatttaccccttataaatattttttgtggtctccatgtaaaattttgtagtggaacaaagaaagtaatc 9129542  T
Q  161 attacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaa---tatcattctctttcttt 228  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  9129541 attacttaaaagtgaaagtttaaaaataataacaaggacaattgagtaaaaatattatcattctctttcttt 9129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 38817815 - 38817988
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||  |||| |||||| |||| |||||| ||||||| ||||||||  ||||||||||||||||||| || |||||||||||||||||    
T  38817815 tatttgtcccataatatttgactttctcaaatttctaagcaaaatttgataaatttaccccttataaatactttttgtggtccccatgtaaaagtttgta 38817914  T
Q  141 atggaacaaagaaagtaatcattacttaaaatgaaggtttcaaaataataacaaggacaatttagtaaaaatat 214  Q
     || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  38817915 gtgaaacaaagaaagtaataattacttaaaatgaaggtttcaaaataataacaaggacaattcaataaaaatat 38817988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 46370968 - 46371152
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||  ||||||||||||||||||| || |||| | ||||||||||    
T  46370968 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttaccccttataaatactttttgtggtc-ccatattaaagtttgta 46371066  T
Q  141 atggaacaaagaaagtaatcattacttaaaatgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||||||||||||||||  ||  || ||||||||||||| |||||| ||||| ||||||| ||||| |||||||||||    
T  46371067 gtggaacaaagaaagtaatcattactttgaa--aaagtttcaaaataatgacaagggcaattcagtaaaagtatcactctctttcttt 46371152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 39151156 - 39150966
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||||||||| ||||||  ||||||||||||||||||| ||  ||||| ||||||||||    
T  39151156 tatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtcctcatgttaaagtttgta 39151057  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| |||||||||||||||||    
T  39151056 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcattctctttcttt 39150966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 46862597 - 46862787
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  46862597 tatttgtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 46862696  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | || |||| ||||| |||||||||||    
T  46862697 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaggaaaagtatcactctctttcttt 46862787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 28036960 - 28036769
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||   ||||||||||||||||||| || |||||| ||||||||||    
T  28036960 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccatgttaaagtttgta 28036861  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagt-aaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||| |||||||||| |||||||||||    
T  28036860 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaaatatcactctctttcttt 28036769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 38321686 - 38321876
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||| | | |||||   ||||||||||||||||||| || |||||| ||||||||||    
T  38321686 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttaaaagatttaacccttataaatactttttgtggtccccatgttaaagtttgta 38321785  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  38321786 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 38321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 50777038 - 50777228
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||||| | |||| |||||| ||||||||| ||||||  ||||||||||||||||| | || |||||| ||||||||||    
T  50777038 tatttgtcccataatacttgaccttcttaaatttctaagcaaaatttgacagatttaccccttataaatactttttggggtccccatgttaaagtttgta 50777137  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  50777138 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 50777228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 32045874 - 32046064
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||| ||||||||| |||||||||||||||| |||||| ||||||| | ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  32045874 tatttgttccacaatacttgaccttctcagatttctaagcaaaatttgaaagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 32045973  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||  |||||| ||| |  |||||| ||||| | |||||||||    
T  32045974 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataacgacaagggcaactcggtaaaagtatcactttctttcttt 32046064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 8229104 - 8229282
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||| || |||||| | ||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  8229104 tatttgttcctcaatacttaaccttcttagatttttaagcaaaatttgacaaatttaccccttataaatactttttgtggtccccatgttaaagtttgta 8229203  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatca 216  Q
     || || |||||||||||||||||||||||| ||  || |||| |||||||| |||||| ||| | |||||||||||||    
T  8229204 gtgaaataaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaaatatca 8229282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 1207697 - 1207521
Alignment:
Q  53 aatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaaga 152  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||| | || | | |||| ||||||||||  ||||||| ||    
T  1207697 aatacttgaccttctcagatttctaagcagaatttgacagatttacc-cttataaatacttttgg-gtcccctatgttaaagtttgtagaggaacaagga 1207600  T
Q  153 aagtaatcattacttaaaa-tgaag--gtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||||| ||||   ||||||||||||| |||||| ||||| ||||||||||||||| |||||||||    
T  1207599 aagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttcttt 1207521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 1929475 - 1929286
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||  |||||||||| |||||||| || |||||| ||||||||||    
T  1929475 tatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttaccccttataaatattttttgtggtccccatgttaaagtttgta 1929376  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| |||  ||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| ||| |||||||    
T  1929375 gtggaacaaa-aaaaaaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttcttt 1929286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 47603809 - 47603740
Alignment:
Q  64 ttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaa 133  Q
    |||||| |||||||||||||||||||||| |||||  |||||||||  |||| ||| |||||||||||||    
T  47603809 ttctcaaatttttaagcagaatttgacaagtttaccccttataaatgtttttggtgatctccatgtaaaa 47603740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 9753811 - 9754000
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||  |||||||||| |||||||| |||| |||||||||||||||    
T  9753811 tatttgtcccataatacttgaccttctcaaatttctaagcagaatttgacaaatttacctcttataaatattttttgtggtctcaatgtaaaagtttgta 9753910  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataa-taacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  9753911 gtgaaacaaagaaagtaatcattacttaaaagtgaaggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttcttt 9754000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 13243801 - 13243616
Alignment:
Q  45 tgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatgg 144  Q
    |||| |||||||  ||||||||||| |||| |||||||||||||||||||| ||  ||||||||||||||||||| |||| ||||||||||||||| |||    
T  13243801 tgtctcacaatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataaatactttttgtggtctcaatgtaaaagtttgtagtgg 13243702  T
Q  145 aacaaagaaagtaatcattactt-aaaatgaaggtttcaaaataa-taacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  13243701 aacaaagaaaataatcattacttaaaaatgaaggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttcttt 13243616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 12738625 - 12738435
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||  |||||||||| |||||||| || |||||| ||||||||||    
T  12738625 tatttgtcccataatacttgaccttatcagatttctaagcagaatttgacaaatttaccccttataaatattttttgtgatccccatgttaaagtttgta 12738526  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||||| ||||||||||||||| |||||||||    
T  12738525 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttcttt 12738435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 17336229 - 17336039
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| ||||||||| |||||| |||||||||||||||| ||||||  ||||||||||||||||||| |  |||||| ||||||| ||    
T  17336229 tatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgtggttcccatgttaaagtttcta 17336130  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||| ||||||||||||||||||||| ||  || ||||||||||||| ||||||||| || |||||||||||||||||||||||||    
T  17336129 gtggaacaacgaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacagttcagtaaaaatatcattctctttcttt 17336039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 27820814 - 27821004
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||| ||||||    
T  27820814 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaaatttgta 27820913  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  27820914 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 27821004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 17493567 - 17493757
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||| |||||||||||| ||| || ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  17493567 tatttgtcccacaatacttgatcttctcagatttctaaacaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 17493666  T
Q  141 atggaacaaagaaagtaatcattactt-aaaatg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| |||||||||||||||| ||||||  || ||||||||||||| |||||| ||| ||||||||| ||||| |||||||||||    
T  17493667 gtggaacaaataaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttcttt 17493757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 18575072 - 18575259
Alignment:
Q  44 ttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatg 143  Q
    ||||||||||||||  ||||||||||||||| |||||| |||||||||||||||   ||||||||||||||||||| || |||||| |||||||||| ||    
T  18575072 ttgtcccacaatactcgaccttctcagatttctaagcaaaatttgacaaatttatctcttataaatactttttgtggtccccatgttaaagtttgtagtg 18575171  T
Q  144 gaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  18575172 gaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 18575259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 11254544 - 11254731
Alignment:
Q  44 ttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatg 143  Q
    |||||||||||||| ||||||| |||||||| |||||| ||||||||| ||||||   |||||||||||||||||| || |||||| |||||||||| ||    
T  11254544 ttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtg 11254643  T
Q  144 gaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  11254644 gaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 11254731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 39906951 - 39907139
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  |||||||||||||||||||   ||||||| ||||||||||    
T  39906951 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtg--gtccatgttaaagtttgta 39907048  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  ||  |||||||||||| | |||| ||| | ||||||| ||||| |||||||||||    
T  39907049 gtggaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgataagggcaactcagtaaaagtatcactctctttcttt 39907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 38070154 - 38069964
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| || ||| ||||||||| ||||||   |||||||||||||||||| || |||||| ||||||||||    
T  38070154 tatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttacccattataaatactttttgtggtccccatgttaaagtttgta 38070055  T
Q  141 atggaacaaagaaagtaatcattactt-aaaatg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||||||| |||||||||||| ||||||  || ||||||||||||| |||||| ||| | ||||||| ||||| | |||||||||    
T  38070054 gtggaacaaagaaaataatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactatctttcttt 38069964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 11147779 - 11147880
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||||||||| ||||||||  |||||||| |||| |||||| ||||||||| |||||||||| |||| ||||| |||||||||||||||||||| ||    
T  11147779 gtaaaagtttgtagtggaacaattaaagtaattattatttaaaagtgaaggtttaaaaataataataagggcaattcagtaaaaatatcattctcttcct 11147878  T
Q  227 tt 228  Q
    ||    
T  11147879 tt 11147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 2970923 - 2970735
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||  | ||||||||||||||||| |||| |||| ||||||||||    
T  2970923 tatttgtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttaccccgtataaatactttttgtggtctcaatgt-aaagtttgta 2970825  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataa-taacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| ||||||||||| |||||||||    
T  2970824 gtggaacaaagaaagtaatcattacttaaaagtgaaggtttcaaaataattaacaagggcaattcagtgaaaatatcattatctttcttt 2970735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 42897633 - 42897443
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  42897633 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 42897534  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  42897533 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 42897443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 14044097 - 14044286
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||  |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  14044097 tatttgtcccataatatttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgtggtccccatgttaaagtttgta 14044196  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| ||||||||||||| |||||| ||  || ||||||||||||| |||||| ||| ||||| ||| ||||| |||||||||||    
T  14044197 gtggaacaaataaagtaatcattatttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagt-aaagtatcactctctttcttt 14044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 36982227 - 36982417
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| || ||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  36982227 tatttgtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 36982326  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| ||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| ||| |||||||    
T  36982327 gtggaacaaataaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttcttt 36982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 36768046 - 36767945
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    |||||| |||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  36768046 gtaaaaatttgtagtggaacaaagaaagtaatcattatttaaaagtgaaggtttaaaaataataataagggcaattcagtaaaaatatcactctctttct 36767947  T
Q  227 tt 228  Q
    ||    
T  36767946 tt 36767945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 33404359 - 33404460
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||| ||||||| ||||||||  |||||||| |||| |||||| | ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  33404359 gtaaatgtttgtagtggaacaattaaagtaattattatttaaaagtaaaggtttaaaaataataataagggcaattcagtaaaaatatcactctctttct 33404458  T
Q  227 tt 228  Q
    ||    
T  33404459 tt 33404460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 1020 - 1199
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  1020 tatttgtcccacaatacttgagcttctcagatttttaagcaggatttgacaaatttaccccttataaatactttttgtggtctccatgtaaaagtttgta 1119  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||         ||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  1120 gtggaac---------aatcattacttaaaagtgaaggtttcaaaataataacaagagcaattcagtaaaaatatcattctctttcttt 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 10276 - 10086
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| |||||   ||||||||||||||||||| || |||||| ||||||| ||    
T  10276 tatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccatgttaaagtttata 10177  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || |||||||||||||||||||| ||| | ||||||||||||| |||||||||||    
T  10176 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataataacaagggcaactcagtaaaaatatcactctctttcttt 10086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 40496814 - 40497004
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  40496814 tatttgtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 40496913  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  40496914 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 40497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 50676516 - 50676704
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  50676516 tatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaatactttttgtggtc-ccatgttaaagtttgta 50676614  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || |||| |||||||| |||||| ||| | ||||||||||||| |||||||||||    
T  50676615 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagg-caactcagtaaaaatatcactctctttcttt 50676704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 51545703 - 51545893
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  51545703 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 51545802  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     ||||||||| |||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  51545803 gtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 51545893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 48737579 - 48737757
Alignment:
Q  53 aatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaaga 152  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| || |||||| |||||||||| |||||||||||    
T  48737579 aatacttgatcttttcagatttttaagcagaatttgacaaatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaaga 48737678  T
Q  153 aagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    || |||||||||||||||| ||  || ||||||||||||| |||||| ||||| ||||||||||||||| |||||||||    
T  48737679 aaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattttctttcttt 48737757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 54014278 - 54014468
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  54014278 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 54014377  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||| ||||||||||| ||  || ||||||||||||| | |||| ||| | ||||||| ||||| |||||||||||    
T  54014378 gtggaacaaagaaagtaattattacttaaaagtgaaaaagtttcaaaataatgataagggcaactcagtaaaagtatcactctctttcttt 54014468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 41346088 - 41346266
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  41346088 tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgta 41346187  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatca 216  Q
     |||||||||||||||||||||||||||||| ||  || |||| |||||||| |||||| ||| | ||||||| |||||    
T  41346188 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatca 41346266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 48169765 - 48169955
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||||||||| |||||   ||||||||||||||||||| || |||||| ||||||||||    
T  48169765 tatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaatactttttgtggtccccatgttaaagtttgta 48169864  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||  | ||||| | ||||| |||||||||||    
T  48169865 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcagctcagtaatagtatcactctctttcttt 48169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 24709051 - 24709241
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||    |||||||||||||||||| ||  ||||| ||||||||||    
T  24709051 tatttgtcccacaatacttgaccttctcagatttataagcaaaatttgacagatttatcctttataaatactttttgtggtcctcatgttaaagtttgta 24709150  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     || ||||||||||||||||||||||||||| ||  ||  |||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  24709151 gtgaaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 24709241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 12568267 - 12568169
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgt 139  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| |||||||||    
T  12568267 tatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgt 12568169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 13544731 - 13544633
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgt 139  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||| || |||||| |||||||||    
T  13544731 tatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaagtttgt 13544633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 30462798 - 30462899
Alignment:
Q  128 gtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tgaaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttct 226  Q
    ||||||||||||| ||||||||  |||||||| |||| |||||| ||||||||| |||||||||| |||| ||||| ||||||||||||| ||| |||||    
T  30462798 gtaaaagtttgtagtggaacaattaaagtaattattatttaaaagtgaaggtttaaaaataataataagggcaattcagtaaaaatatcactctatttct 30462897  T
Q  227 tt 228  Q
    ||    
T  30462898 tt 30462899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 13542947 - 13542861
Alignment:
Q  145 aacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||||||||||||||||||| ||  || |||| |||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  13542947 aacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcaatctctttcttt 13542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 69794 - 69984
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||  ||||||||||||||||||| || || | | ||||||||||    
T  69794 tatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccgcttataaatactttttgtgatccccgtattaaagtttgta 69893  T
Q  141 atggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
     |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||||||| | ||||||| ||||| |||||||||||    
T  69894 gtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaattatcactctctttcttt 69984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 10849 - 10662
Alignment:
Q  44 ttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgtaatg 143  Q
    |||||||||||||| ||||||| |||||||| |||||| ||||||||| ||||||   |||||||||||||||||| || |||||| |||||||||| ||    
T  10849 ttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccatgttaaagtttgtagtg 10750  T
Q  144 gaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattctctttcttt 228  Q
    ||||||||||| |||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| ||||| |||||||||||    
T  10749 gaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttt 10662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 3855 - 3985
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||| | ||  ||||| ||||||||||    
T  3855 tatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgcggtcctcatgttaaagtttgta 3954  T
Q  141 atggaacaaagaaagtaatcattacttaaaa 171  Q
    |||||||||||||||||||||||||||||||    
T  3955 atggaacaaagaaagtaatcattacttaaaa 3985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 16398 - 16528
Alignment:
Q  41 tatttgtcccacaatacgtgaccttctcagatttttaagcagaatttgacaaatttactacttataaatactttttgtgttctccatgtaaaagtttgta 140  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||   |||||||||||||||||| || |||||| ||||||||||    
T  16398 tatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccctttataaatactttttgtggtccccatgttaaagtttgta 16497  T
Q  141 atggaacaaagaaagtaatcattacttaaaa 171  Q
     || |||||||||||||||||||||||||||    
T  16498 gtgaaacaaagaaagtaatcattacttaaaa 16528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 92345 - 92238
Alignment:
Q  124 ccatgtaaaagtttgtaatggaacaaagaaagtaatcattacttaaaa-tg--aaggtttcaaaataataacaaggacaatttagtaaaaatatcattct 220  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| ||  || ||||||||||||| |||||| ||| | ||||||| | ||| |||    
T  92345 ccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtgtcactct 92246  T
Q  221 ctttcttt 228  Q
    ||||||||    
T  92245 ctttcttt 92238  T

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