View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_high_4 (Length: 602)
Name: NF17943_high_4
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 32169650 - 32169239
Alignment:
| Q |
13 |
attatactacaggaataatgtttgaaaatgatttaattaaaactccaacaaccattgaccagtccagtcggtgttatttgtattgttgttcagttataat |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
32169650 |
attatactacagcaataatgtttgaaaatgatttaattaaaactccaacaaccattgaccagtccagtcggtgttatatgtattgttgttcacttataat |
32169551 |
T |
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| Q |
113 |
aaagttgggtcttgacaacgagtgtctcataagactctttaaagattctaaattaagaaactt---tttatnnnnnnnnnnnnnnnttttaatttttaat |
209 |
Q |
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||| || |||||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||||||| ||| |
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| T |
32169550 |
aaa-ttaggtcttgataacgagtgtctcataatactcttta--gattctaaaataagaaaaaaaaatttataaaaaaagtcaaaaattttaattttcaat |
32169454 |
T |
|
| Q |
210 |
atactttacacaaacttttatacaatgttacca------gtcttggaggcggctgagctgtgtatagtacata--ctcactccatagggacatcgaccag |
301 |
Q |
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| T |
32169453 |
acactttacataaacttttatacaatgttatcatttaaagtcttggaggcggctgagctgtgtatagtacatatgctcattccatagggacatcgaccag |
32169354 |
T |
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| Q |
302 |
tttcatcagcaagacctgttactgttagaatatcttcttcaatggcaaagaaacctgtgaaatactacgtggtatgtagtttgtttatttatttatttca |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169353 |
tttcatcagcaagacctgttactgttagaatatcttc---aatggcaaagaaacctgtgaaatactacgtggtatgtagtttgtttatttatttatttca |
32169257 |
T |
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| Q |
402 |
ttgagtaattttataact |
419 |
Q |
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||||||||| |||||||| |
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| T |
32169256 |
ttgagtaatgttataact |
32169239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 421 - 585
Target Start/End: Complemental strand, 32169208 - 32169044
Alignment:
| Q |
421 |
tgttgtgtgaatcttagtgatgaggtacatactcaggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaag |
520 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169208 |
tgttgtgtgaatctgagtgatgaggtacatactcaggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaag |
32169109 |
T |
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| Q |
521 |
ataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgttatttg |
585 |
Q |
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| T |
32169108 |
ataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgttatttg |
32169044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 438 - 582
Target Start/End: Complemental strand, 32165400 - 32165256
Alignment:
| Q |
438 |
tgatgaggtacatactcaggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatgg |
537 |
Q |
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|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
32165400 |
tgatgatgtacatacacaggttgatgcattcaccgattcagcattcaaagggaatccagcagctgtgtgtttattagaagaagataaagatgatgaatgg |
32165301 |
T |
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| Q |
538 |
ttgcaattagtagctgctgaattcaacatctctgaaacatgttat |
582 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
32165300 |
ttgcaatcagtagctgctgaattcaacatctcggaaacatgttat |
32165256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 585
Target Start/End: Complemental strand, 27325300 - 27325169
Alignment:
| Q |
454 |
caggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctg |
553 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
27325300 |
caggtggatgctttcacagagacagtattcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaagcattagctg |
27325201 |
T |
|
| Q |
554 |
ctgaattcaacatctctgaaacatgttatttg |
585 |
Q |
| |
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|||||||||| ||||| |||||||||||||| |
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| T |
27325200 |
ctgaattcaatgtctctcaaacatgttatttg |
27325169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 463 - 585
Target Start/End: Complemental strand, 27350321 - 27350199
Alignment:
| Q |
463 |
gcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattca |
562 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
27350321 |
gcattcacggagacagcattcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaatcattagctgctgaattca |
27350222 |
T |
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| Q |
563 |
acatctctgaaacatgttatttg |
585 |
Q |
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| T |
27350221 |
atgtctctcaaacatgttatttg |
27350199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 454 - 543
Target Start/End: Original strand, 27358143 - 27358232
Alignment:
| Q |
454 |
caggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaa |
543 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
27358143 |
caggtggatgcattcactgagacagcattcaaagggaatccagcagcagtatgtttattagaagaagataaagatgatgaatggttgcaa |
27358232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 567
Target Start/End: Complemental strand, 32158246 - 32158160
Alignment:
| Q |
481 |
ttcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatc |
567 |
Q |
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||||| ||||| || |||||||||||||| |||| |||| || |||||||||||||||||| || |||| ||||| ||||||||| |
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| T |
32158246 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatc |
32158160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 27325411 - 27325371
Alignment:
| Q |
339 |
ttcaatggcaaagaaacctgtgaaatactacgtggtatgta |
379 |
Q |
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||||||||||||||||||||| || |||||||||||||||| |
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| T |
27325411 |
ttcaatggcaaagaaacctgtcaagtactacgtggtatgta |
27325371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 32165519 - 32165483
Alignment:
| Q |
342 |
aatggcaaagaaacctgtgaaatactacgtggtatgt |
378 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
32165519 |
aatggcaaagaaacatgtcaaatactacgtggtatgt |
32165483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 570
Target Start/End: Original strand, 44288205 - 44288321
Alignment:
| Q |
454 |
caggtggatgcattcacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctg |
553 |
Q |
| |
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||||||||||| ||||| || ||||| ||||| || || || |||||||||||||| |||||||||| | |||||||||||||||||| | |||| | |
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| T |
44288205 |
caggtggatgctttcactgagtcagcgttcaagggaaaccctgcagcagtgtgtttgttagaagaagagagggatgatgaatggttgcaagcattagcag |
44288304 |
T |
|
| Q |
554 |
ctgaattcaacatctct |
570 |
Q |
| |
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|||| ||||| |||||| |
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|
| T |
44288305 |
ctgagttcaatatctct |
44288321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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