View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_10 (Length: 403)
Name: NF17943_low_10
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_10 |
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| [»] scaffold0054 (5 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 38730 - 38921
Alignment:
| Q |
18 |
taaagaagcattgccgttttcccttagttttcgagaatgtcatttcgaaagtagcttaattcatagattttggtaattcccatggaaaattttaagttca |
117 |
Q |
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| T |
38730 |
taaagaagcattgccgttttcccttagttttcgagaatgtcatttcgaaagtagcttaattcatagattttggtaattcccatggaaaattttaagttca |
38829 |
T |
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| Q |
118 |
agattatctcaaaaatcataacagacaaacttgctccattcatgccttcatacatgacaggaacatcaaagattgtctttctgaagctacta |
209 |
Q |
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| T |
38830 |
agattatctcaaaaatcataacagacaaacttgctccattcatgccttcatacatgacaggaacatcaaagattgtctttctgaagctacta |
38921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 38921 - 39020
Alignment:
| Q |
295 |
atgaagttcagccaaaacaaatttctgaaagtctgtcactagccaattccaatgtataattctcccttttgtatactttcttctttaataacatattctt |
394 |
Q |
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| T |
38921 |
atgaacttcagccaaaacaaatttctgaaagtctgtcactagccaattccaatgtataattctcccttttgtatactttcttctttaataacattttctt |
39020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 43535 - 43600
Alignment:
| Q |
18 |
taaagaagcattgccgttttcccttagttttcgagaatgtcatttcgaaagtagcttaattcataga |
84 |
Q |
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| T |
43535 |
taaagaagcattgccattttcccttagatttcgagaatgtca-ttagagagtagctaaattcataga |
43600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 43724 - 43769
Alignment:
| Q |
164 |
ttcatacatgacaggaacatcaaagattgtctttctgaagctacta |
209 |
Q |
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| T |
43724 |
ttcatacatgacaggaacatcaaagattgtctatctgtagctacta |
43769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38675 - 38642
Alignment:
| Q |
18 |
taaagaagcattgccgttttcccttagttttcga |
51 |
Q |
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| T |
38675 |
taaagaagcattgccgttttcccttagttttcga |
38642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 29155165 - 29155238
Alignment:
| Q |
18 |
taaagaagcattgccgttttcccttagttttcgagaatgtcatttcgaaagtagcttaattcatagattttggt |
91 |
Q |
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| T |
29155165 |
taaagaagcattgcctttttcccataggttttgagaatgtcatttcaaaagtatcttaattcagagaatttggt |
29155238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 24416137 - 24416183
Alignment:
| Q |
34 |
ttttcccttagttttcgagaatgtcatttcgaaagtagcttaattca |
80 |
Q |
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| T |
24416137 |
ttttcccttaggtttcgacaatgtcatttcgaaagtagcttaattca |
24416183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 29146422 - 29146468
Alignment:
| Q |
34 |
ttttcccttagttttcgagaatgtcatttcgaaagtagcttaattca |
80 |
Q |
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| T |
29146422 |
ttttcccttaggtttcgagaatgtcatttcgaaaggagcttaattca |
29146468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 24416258 - 24416319
Alignment:
| Q |
91 |
taattcccatggaaaattttaagttcaagattatctcaaaaatcataacagacaaacttgct |
152 |
Q |
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| T |
24416258 |
taatttccatgccaaattttaagttgaaaattatctcaaaaatcacagcagacaaacttgct |
24416319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 25517245 - 25517187
Alignment:
| Q |
18 |
taaagaagcattgccgttttcccttagttttcgagaatgtcatttcgaaagtagcttaa |
76 |
Q |
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||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |
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| T |
25517245 |
taaagaagcattgtcattttccctttggtttcgagaatgccatttcataagtagcttaa |
25517187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 24416379 - 24416435
Alignment:
| Q |
244 |
acatcttggagtggtcttttttactgaaagttcttataggctttggtttcaatgaag |
300 |
Q |
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| T |
24416379 |
acatcttggaaaggtcttttctgttgaaagttcttataagctttggttacaatgaag |
24416435 |
T |
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