View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_low_12 (Length: 370)

Name: NF17943_low_12
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_low_12
NF17943_low_12
[»] chr5 (9 HSPs)
chr5 (63-357)||(38629040-38629333)
chr5 (61-276)||(38600496-38600711)
chr5 (81-171)||(3955830-3955920)
chr5 (63-124)||(6228396-6228459)
chr5 (132-171)||(18282546-18282585)
chr5 (73-165)||(9050999-9051091)
chr5 (63-127)||(26647214-26647278)
chr5 (63-127)||(26917757-26917821)
chr5 (63-127)||(26918798-26918862)
[»] chr1 (5 HSPs)
chr1 (80-169)||(42560943-42561032)
chr1 (81-165)||(25788699-25788783)
chr1 (96-169)||(42617345-42617418)
chr1 (80-127)||(40368061-40368108)
chr1 (84-124)||(15883239-15883279)
[»] chr8 (3 HSPs)
chr8 (63-169)||(29005516-29005622)
chr8 (295-357)||(38746273-38746335)
chr8 (80-120)||(15920055-15920095)
[»] chr7 (6 HSPs)
chr7 (73-171)||(5357342-5357440)
chr7 (80-171)||(24650270-24650361)
chr7 (80-127)||(10040847-10040894)
chr7 (81-122)||(35791938-35791979)
chr7 (80-120)||(3584134-3584174)
chr7 (63-127)||(14734490-14734553)
[»] chr3 (7 HSPs)
chr3 (82-168)||(1338122-1338208)
chr3 (295-357)||(54402233-54402295)
chr3 (80-161)||(28247302-28247383)
chr3 (64-104)||(13867869-13867909)
chr3 (63-123)||(31293052-31293112)
chr3 (73-120)||(34666965-34667012)
chr3 (80-153)||(19578674-19578747)
[»] chr6 (3 HSPs)
chr6 (80-124)||(16260390-16260434)
chr6 (64-116)||(2536594-2536646)
chr6 (73-119)||(12185315-12185361)
[»] chr2 (8 HSPs)
chr2 (73-169)||(32630692-32630789)
chr2 (81-163)||(32908682-32908762)
chr2 (73-125)||(11259342-11259394)
chr2 (73-127)||(33133690-33133744)
chr2 (64-141)||(1743424-1743501)
chr2 (134-171)||(35656743-35656780)
chr2 (80-120)||(14690139-14690179)
chr2 (80-164)||(23914569-23914653)
[»] chr4 (7 HSPs)
chr4 (81-167)||(32639907-32639993)
chr4 (63-141)||(50376963-50377040)
chr4 (80-120)||(12294313-12294353)
chr4 (80-120)||(44277361-44277401)
chr4 (74-119)||(26492355-26492400)
chr4 (80-124)||(16529748-16529792)
chr4 (71-151)||(27746684-27746764)
[»] scaffold0013 (1 HSPs)
scaffold0013 (80-120)||(97007-97047)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 63 - 357
Target Start/End: Complemental strand, 38629333 - 38629040
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgt 162  Q
    ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38629333 attatttcagttatattcttaaacaaattttcctataataatgttatattgttggtgttattgaatgtgataagagtttatcttatatttgcaatattgt 38629234  T
Q  163 tgtgtaattagagaaaggcatggcttgctacaatcagtc----acatctatacatataaattttatgtcaaaaatctatacatataatataattttaggt 258  Q
    |||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  38629233 tgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaattttatgtcaaaaatctatac-----atataattttaggt 38629139  T
Q  259 tacctctaatatgatcccnnnnnnncaaggttcatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc 357  Q
    || |||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629138 tatctctaatatgatccctttttttcaaggtccatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc 38629040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 61 - 276
Target Start/End: Complemental strand, 38600711 - 38600496
Alignment:
Q  61 taattatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatatt 160  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38600711 taattatttcagttatattcttaaacaaattttcctataacaatgttatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatatt 38600612  T
Q  161 gttgtgtaattagagaaaggcatggcttgctacaatcagtc----acatctatacatat-aaattttatgtcaaaaatctatacatataatataatttta 255  Q
    |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||     |||||||||||    
T  38600611 gttgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaaattttatgtcaaaaatctatac-----atataatttta 38600517  T
Q  256 ggttacctctaatatgatccc 276  Q
    |||||||||||||||||||||    
T  38600516 ggttacctctaatatgatccc 38600496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 3955920 - 3955830
Alignment:
Q  81 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 171  Q
    ||||||||||||| || |||||||   ||||||||| |||| |||||    |||||||||||| |||||||||||||||||||||||||||    
T  3955920 ttaaacaaatttttctttaataatgatatattgttgatgtcgttgaaaactataagagtttatattatatttgcaatattgttgtgtaatt 3955830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 6228396 - 6228459
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatata--atattgttggtgtcatt 124  Q
    ||||||| | |||||| || ||||||||||| |||||||||||||  |||||||||||||||||    
T  6228396 attatttcaattatatcctcaaacaaatttttctataataatatattatattgttggtgtcatt 6228459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 18282585 - 18282546
Alignment:
Q  132 ataagagtttatcttatatttgcaatattgttgtgtaatt 171  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  18282585 ataaaagtttatgttatatttgcaatattgttgtgtaatt 18282546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 9050999 - 9051091
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgt 165  Q
    ||||| ||||||||||| ||| |||||||||||| |||||| || ||| ||| ||   ||||||| ||| | |||||||||  ||||||||||    
T  9050999 ttatactcttaaacaaaattttctataataatattatattgctgatgttattaaaatagataagaatttttgttatatttgttatattgttgt 9051091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26647214 - 26647278
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    ||||||| |||||||  |||||||||||| | |||||||||||  ||||| ||||||| ||||||    
T  26647214 attatttcagttatacccttaaacaaattattctataataataatatatttttggtgttattgaa 26647278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26917757 - 26917821
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    ||||||| ||||||   |||||||||||||| |||||||||| | ||||||| ||||| ||||||    
T  26917757 attatttcagttatgcccttaaacaaattttactataataatgttatattgtaggtgttattgaa 26917821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26918798 - 26918862
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    ||||||| |||||||  |||||||||||| | |||||||||||  ||||| ||||||| ||||||    
T  26918798 attatttcagttatacccttaaacaaattattctataataataatatatttttggtgttattgaa 26918862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 42561032 - 42560943
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 169  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  42561032 cttaaacaaatttttctataataatgttatattgttggtgtcattgaaaatgacaagagtttatattatatttgcaatattgttgtgtaa 42560943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 25788699 - 25788783
Alignment:
Q  81 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgt 165  Q
    ||||||||||||| |||||||||||| ||||||||||||||| | ||  |||||||||||||| |||||||| ||||||| ||||    
T  25788699 ttaaacaaatttttctataataatattatattgttggtgtcaattaaaatgataagagtttatattatattttcaatattattgt 25788783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 42617345 - 42617418
Alignment:
Q  96 tataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 169  Q
    ||||||||| | ||||||||  |||| || ||  |||||| ||||||| |||||||||||||||||||||||||    
T  42617345 tataataatgttatattgtttatgtcgttaaaaatgataaaagtttatattatatttgcaatattgttgtgtaa 42617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 40368061 - 40368108
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||||||    
T  40368061 cttaaacaaatttttctatattaatgttatattgttggtgtcattgaa 40368108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 15883239 - 15883279
Alignment:
Q  84 aacaaattttcctataataatataatattgttggtgtcatt 124  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  15883239 aacaaattttcttataataatattatattgtttgtgtcatt 15883279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 29005516 - 29005622
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgt 162  Q
    |||||| || ||||| | ||||||||||||| |||||||| | | ||||||||||| ||||||||   ||||| ||||||| ||||||||||||||||||    
T  29005516 attattcaaattatactgttaaacaaatttttctataatattgttatattgttggtatcattgaaaaggataaaagtttatattatatttgcaatattgt 29005615  T
Q  163 tgtgtaa 169  Q
    |||||||    
T  29005616 tgtgtaa 29005622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 38746335 - 38746273
Alignment:
Q  295 tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc 357  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  38746335 tgtggtcctcttaatatgaccgattatagcaggtagatgtagtattacaactttattcttctc 38746273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 15920055 - 15920095
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  15920055 cttaaacaaattttcttataataatgttatattgttggtgt 15920095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 5357342 - 5357440
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 171  Q
    |||||| |||||| || |||| ||||||||| || |||| ||||| |||||||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  5357342 ttatatccttaaataattttttctataataagattatatagttggcgtcattgaaattgataagagtttatattatatttgcattattgttgtgtaatt 5357440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 24650270 - 24650361
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaatt 171  Q
    |||||||||| |||||| |||||||  |||||||||| |||||||  | |||| |||||||||| |||||||||  ||||||||||||||||    
T  24650270 cttaaacaaactttcctgtaataatgcaatattgttgatgtcattttaagtgaaaagagtttatgttatatttgttatattgttgtgtaatt 24650361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 10040894 - 10040847
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  10040894 cttaaacaaattttcctataaaaatgttatattgttggtgttattgaa 10040847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 35791938 - 35791979
Alignment:
Q  81 ttaaacaaattttcctataataatataatattgttggtgtca 122  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  35791938 ttaaacaaattttcctataataatgttatattgttgatgtca 35791979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 3584134 - 3584174
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||| ||||||||| ||||||||||| |||||||||||||    
T  3584134 cttaagcaaattttcttataataatattatattgttggtgt 3584174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 14734490 - 14734553
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    ||||||| | ||||| | |||||||||||| ||||||||||| | |||||||| |||||||||||    
T  14734490 attatttcaattatactattaaacaaattt-cctataataattttatattgtttgtgtcattgaa 14734553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 1338122 - 1338208
Alignment:
Q  82 taaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgta 168  Q
    ||||||||||||  ||||| ||| | ||||||||||||||||||||  ||||||||||||||  |||||||||||||| ||||||||    
T  1338122 taaacaaatttttgtataaaaatgttatattgttggtgtcattgaaaatgataagagtttatactatatttgcaatatggttgtgta 1338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 54402295 - 54402233
Alignment:
Q  295 tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc 357  Q
    ||||||||||||||||| |||  |||||||||||| |||||| |||| |||||||||||||||    
T  54402295 tgtggtcctcttaatataaccaattatagcaggtacatgtagtattacaactttattcttctc 54402233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 28247302 - 28247383
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattg 161  Q
    ||||||||||||||| |||||| || | |||| |||| ||||||||||  |||||| | ||||| |||||||||||||||||    
T  28247302 cttaaacaaattttcatataatgatgttatatagttgatgtcattgaaaatgataaaaatttatattatatttgcaatattg 28247383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 13867909 - 13867869
Alignment:
Q  64 ttatttaagttatattcttaaacaaattttcctataataat 104  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  13867909 ttatttcagttatattcttaaacaaattttcatataataat 13867869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 31293052 - 31293112
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcat 123  Q
    ||||||| | ||||| | |||| |||||||| |||||||||||| ||||||||||||||||    
T  31293052 attattttaattatacttttaagcaaatttttctataataatattatattgttggtgtcat 31293112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 34666965 - 34667012
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||||| ||||||||||||| |||||||||||  |||||||||||||    
T  34666965 ttatatttttaaacaaatttttctataataatagtatattgttggtgt 34667012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 19578674 - 19578747
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttg 153  Q
    |||||||||||||||| |||||||| | ||||||||||||| ||| ||    |||||||||| | |||||||||    
T  19578674 cttaaacaaattttccaataataatgttatattgttggtgttattaaaaaatataagagtttttattatatttg 19578747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 16260434 - 16260390
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcatt 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  16260434 cttaaacaaattttcctataataatattatattgttggtgtcatt 16260390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 2536646 - 2536594
Alignment:
Q  64 ttatttaagttatattcttaaacaaattttcctataataatataatattgttg 116  Q
    |||||| | ||||||| ||||||||||||| |||||||||||| |||||||||    
T  2536646 ttatttcaattatatttttaaacaaatttttctataataatattatattgttg 2536594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 12185315 - 12185361
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtg 119  Q
    |||||||||||||||||||||| |||| |||| | ||||||||||||    
T  12185315 ttatattcttaaacaaattttcttatattaatgttatattgttggtg 12185361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 32630789 - 32630692
Alignment:
Q  73 ttatattcttaaacaaatttt-cctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgtaa 169  Q
    ||||| ||| ||||||||||| ||||||||||| | ||||| ||||||||||||||     ||||||| ||| |||||||||||||||||| ||||||    
T  32630789 ttatactctaaaacaaatttttcctataataatgttatatttttggtgtcattgaaaagattaagagtatatattatatttgcaatattgtagtgtaa 32630692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 32908682 - 32908762
Alignment:
Q  81 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgtt 163  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||||   | ||||||||||| |||||||| | ||||||||    
T  32908682 ttaaacaaattt-cctataataatgttatattgttggtgtcattgaa-aaggtaagagtttatattatattttctatattgtt 32908762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 11259342 - 11259394
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattg 125  Q
    ||||| || |||||||||||| |||||||||| ||||||||||| ||||||||    
T  11259342 ttatactcataaacaaatttttctataataatgtaatattgttgatgtcattg 11259394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 33133744 - 33133690
Alignment:
Q  73 ttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaa 127  Q
    |||||| |||||| ||||||| ||||||||||||  |||||||||||| ||||||    
T  33133744 ttatatccttaaataaatttttctataataatattttattgttggtgttattgaa 33133690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 1743424 - 1743501
Alignment:
Q  64 ttatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagttt 141  Q
    |||||| | ||||| ||||||||||||||| |||||||||| | ||||||||| ||| ||| ||   |||||||||||    
T  1743424 ttatttcaattatagtcttaaacaaatttttctataataattttatattgttgttgtaattaaaaaagataagagttt 1743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 35656780 - 35656743
Alignment:
Q  134 aagagtttatcttatatttgcaatattgttgtgtaatt 171  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  35656780 aagagtttatattatatttgcactattgttgtgtaatt 35656743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 14690179 - 14690139
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  14690179 cttaaacatattttcctataataatgttatattgttggtgt 14690139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 23914569 - 23914653
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttg 164  Q
    |||||||||||||  |||||| ||| | |||||||| |||| ||||||   ||||||| ||||| |||||||||  |||||||||    
T  23914569 cttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgttatattgttg 23914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 32639993 - 32639907
Alignment:
Q  81 ttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatttgcaatattgttgtgt 167  Q
    ||||| ||||||| |||||||||| | ||||||||| | ||||||||   ||||  ||||||| ||||||||||||| |||||||||    
T  32639993 ttaaataaatttttctataataatgttatattgttgatttcattgaaaaggatacaagtttatattatatttgcaatgttgttgtgt 32639907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 50376963 - 50377040
Alignment:
Q  63 attatttaagttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagttt 141  Q
    |||||| ||||||||| | ||||||| ||| | ||||||||| | ||||||||||||||||||||  ||||||||||||    
T  50376963 attattaaagttatatccctaaacaactttgc-tataataatgttatattgttggtgtcattgaaaatgataagagttt 50377040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 12294313 - 12294353
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  12294313 cttaaacaaattttcatataataatattatattgttggtgt 12294353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 44277401 - 44277361
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  44277401 cttaaacaaattttcatataataatattatattgttggtgt 44277361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 26492355 - 26492400
Alignment:
Q  74 tatattcttaaacaaattttcctataataatataatattgttggtg 119  Q
    |||| ||||||||||||||||||||| |||| | ||||||||||||    
T  26492355 tatactcttaaacaaattttcctatattaatgttatattgttggtg 26492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 16529792 - 16529748
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgtcatt 124  Q
    |||||||||||||||||||||| |||| ||||| |||||| ||||    
T  16529792 cttaaacaaattttcctataatgatattatattattggtggcatt 16529748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 27746764 - 27746684
Alignment:
Q  71 agttatattcttaaacaaattttcctataataatataatattgttggtgtcattgaatgtgataagagtttatcttatatt 151  Q
    |||||||  ||||||||||||  |||| |||||| | ||||| ||||||||||||||   ||||||| ||||| |||||||    
T  27746764 agttatacccttaaacaaattcacctacaataatgttatattattggtgtcattgaaaaagataagaatttatattatatt 27746684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 97007 - 97047
Alignment:
Q  80 cttaaacaaattttcctataataatataatattgttggtgt 120  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  97007 cttaaacaaatttttttataataatattatattgttggtgt 97047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University