View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_13 (Length: 367)
Name: NF17943_low_13
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 163027 - 162673
Alignment:
| Q |
1 |
tatagaatatagagtaacagttctttacagttaactagtattagtctagtcagcttaattaactagagttagtcagtctataactaactgagtcaaatta |
100 |
Q |
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| T |
163027 |
tatagaatatagagtaacagttctttacagttaactagtattagtctagtcagcttaattaactagagttagtcagtctataactaactgagtcaaatta |
162928 |
T |
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| Q |
101 |
gtttgagggattactactctataaatacttgtcatcatataaacataactaacttttaacaaccttgtctattactgccaatttactctcaagattaatg |
200 |
Q |
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| T |
162927 |
gtttgagggattactactctataaatacttgtcatcatataaacataactaacttttaacaaccttgtctattactgccaatttactctcaagattaatg |
162828 |
T |
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| Q |
201 |
aagtatatcattttgtcaatgagcaagcaattaagcttcgagtttgtcatgtatcaactaaagatcaacctgctgacatgttaactaaattgctgccatc |
300 |
Q |
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| T |
162827 |
aagtatatcattttgtcaatgagcaagcaattaagcttcgagtttgtcatgtatcaactaaagatcaacctgctgacatgttaactaaattgctgccatc |
162728 |
T |
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| Q |
301 |
tacttagatttcaggatcttagaaaataaactcaagttattcatggacaatattg |
355 |
Q |
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| T |
162727 |
tgcttagatttcaggattttagaaaataaattcaagttattcatggacaatattg |
162673 |
T |
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