View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_14 (Length: 361)
Name: NF17943_low_14
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 26566816 - 26567150
Alignment:
| Q |
15 |
aagagtttgtggagaaggttgtgatttgtggatcaggtgtgagtttggaagagaaggatataaaagatggnnnnnnncctgtttctgatttggatgaagc |
114 |
Q |
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| T |
26566816 |
aagagtttgtggagaaggttgtgatttgtggttcaggtgtgagtttggaagagaaggatataaaagatggtttttttcctgtttctgatttggatgaagc |
26566915 |
T |
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| Q |
115 |
tgctaatattttggtgccacaaactccacaaaagcttagggaactttttggatatgcnnnnnnncgaccacgtcgtttggcttggttgccctcttgcttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26566916 |
tgctaatattttggtgccacaaactccacaaaagcttagggaactttttggatatgctttttttcgaccacgtcgtttggcttggttgccctcttgcttc |
26567015 |
T |
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| Q |
215 |
ctccatgatttcattcatgtaagtttgtttcttatttataaatttcatgcaagtctttgattcttcttactgaatgtgataaaatcaagagttaaagtat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26567016 |
ctccatgatttcattcatgtaagtttgtttcttatttataaatttcatacaagtctttgattcttcttactgaatatgataaaatcaagagttaaagtat |
26567115 |
T |
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| Q |
315 |
atgtaaagcgtatgtcaactgacaatgccgatatt |
349 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
26567116 |
atgtaaagcgtaggtcaactgacaatgccgatatt |
26567150 |
T |
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