View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_15 (Length: 358)
Name: NF17943_low_15
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 15447773 - 15448086
Alignment:
| Q |
16 |
atttgcgatagtaagaaaattggaaaacacgacatacctttggttttgccattgataaatgagagtatatcatcaattgatctttcttcctcaacagtct |
115 |
Q |
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| T |
15447773 |
atttgcgatagtaagaaaattggaaaacacgacatacctttgtttttgccattgataaatgagagtatatcatcaatcgacctttcttcctcaacagtct |
15447872 |
T |
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| Q |
116 |
aaaatatggaggcattgtgtgagatttaaaataaggtgacataaacagtgttatatnnnnnnntaaattaatggttaaattaatgtttttgttagtccct |
215 |
Q |
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| T |
15447873 |
aaaatatggaggcattgtgtgagatttaaaataaggagacataaacagtgttatat--------aaaaaaat----aaattaatgtttttgttagtccct |
15447960 |
T |
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| Q |
216 |
aataatatggagaattccaccgataacactatcttaatcacataaaaaacatggttaattcaattgaatagaatgttaatttgatttacggtaaaagtta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15447961 |
aataatatggagaattccaccgataacactatcttaatcacataaaaaacatggttaattcaattgaatagaatgttaatttgatttacagtaaaagtta |
15448060 |
T |
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| Q |
316 |
tggtaattgatcaactacattgtata |
341 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
15448061 |
tggtaattgatcaattacattgtata |
15448086 |
T |
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