View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_16 (Length: 342)
Name: NF17943_low_16
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 78 - 325
Target Start/End: Original strand, 9010868 - 9011115
Alignment:
| Q |
78 |
tataatctagcacgagtacatatactatagacaagttaggcatccagtagtttatatatataggtcaagagtaacactcttatgttggtataaccacatc |
177 |
Q |
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| T |
9010868 |
tataatctagcacgagtacatatactatagacaagttaggcatccagtagtttatatatataggtcaagagtaacactcttatgttggtataaccacatc |
9010967 |
T |
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| Q |
178 |
atgtttggaccctagaaactgtcgcagaaaccttacatctaaccaccctttcaaaccaagctatatgactaaacactacctataattgtgacaataagac |
277 |
Q |
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| T |
9010968 |
atgtttggaccctagaaactgtcgcagaaaccttacatctaaccaccctttcaaaccaagctatatgactaaacactacctataattgtgacaataagac |
9011067 |
T |
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| Q |
278 |
ccattagttaacactcaatttcttaataaggatctaatagagatgctt |
325 |
Q |
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| T |
9011068 |
ccattagttaacactcaatttcttaataaggatctaatagagatgctt |
9011115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 9010800 - 9010838
Alignment:
| Q |
10 |
aagaaaatgacaagaatatattaacataattaggaaagt |
48 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
9010800 |
aagataatgacaagaatatattaacataattaggaaagt |
9010838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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