View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_low_17 (Length: 332)

Name: NF17943_low_17
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_low_17
NF17943_low_17
[»] chr4 (6 HSPs)
chr4 (13-315)||(46823007-46823309)
chr4 (26-88)||(3742739-3742801)
chr4 (51-89)||(37709955-37709993)
chr4 (51-92)||(79632-79673)
chr4 (53-89)||(24672844-24672880)
chr4 (30-90)||(54026893-54026952)
[»] chr7 (7 HSPs)
chr7 (26-87)||(16698436-16698497)
chr7 (26-87)||(17672672-17672733)
chr7 (44-86)||(30279060-30279102)
chr7 (51-89)||(35851907-35851945)
chr7 (26-87)||(5038156-5038217)
chr7 (27-84)||(47086969-47087026)
chr7 (26-86)||(48693222-48693282)
[»] chr2 (4 HSPs)
chr2 (26-86)||(4091476-4091536)
chr2 (28-87)||(17296735-17296794)
chr2 (55-89)||(36208231-36208265)
chr2 (55-91)||(37028085-37028121)
[»] chr1 (2 HSPs)
chr1 (53-91)||(31847316-31847354)
chr1 (28-90)||(50441300-50441362)
[»] chr5 (3 HSPs)
chr5 (28-89)||(38433365-38433425)
chr5 (57-92)||(28197535-28197570)
chr5 (57-91)||(14612681-14612715)
[»] chr6 (2 HSPs)
chr6 (53-89)||(7078393-7078429)
chr6 (53-89)||(8814247-8814283)
[»] chr3 (5 HSPs)
chr3 (52-88)||(9194364-9194400)
chr3 (42-86)||(30670545-30670589)
chr3 (26-80)||(42980997-42981051)
chr3 (57-90)||(43149009-43149042)
chr3 (52-88)||(2470856-2470892)
[»] scaffold0219 (1 HSPs)
scaffold0219 (51-92)||(13299-13340)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 46823309 - 46823007
Alignment:
Q  13 aaaatcgaagaaaagttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattttcatcctaggatgcatgtataaagg 112  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46823309 aaaatcgaagaaaagttaagtcacgttgaacattttttagggaatgaggaattttgaatgggagaagagcaattttcatcctaggatgcatgtctaaagg 46823210  T
Q  113 agcaaaataaagaccccgatgaaccataatagaaggatcaaagacccaattgtgtagtttgagaaaggactactctttcttttcccaccctcatacattt 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  46823209 agcaaaataaagaccccaatgaaccataatagaaggatcaaagacccaattgtgtagtttgagaaaggactactctttattttcccaccctcatacatct 46823110  T
Q  213 cgaagactcttggcnnnnnnnnacatgttcagattctaaaattcggacaaatcaaaagcctttgagaagtgtggtaggtgagaaaagagattcacaagaa 312  Q
    | ||||||||||||        |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46823109 caaagactcttggcttttttttacatgttcggattctaaaattcggacaaatcaagagcctttgagaagtgtggtgggtgagaaaagagattcacaagaa 46823010  T
Q  313 aaa 315  Q
    |||    
T  46823009 aaa 46823007  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 3742801 - 3742739
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaatttt 88  Q
    |||||||||| |||||||||  || ||||| |||||||||||||| ||||||||| |||||||    
T  3742801 agttaactcatgttgaacataattaagggattgagcaattttgaaagggagaagaacaatttt 3742739  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 37709955 - 37709993
Alignment:
Q  51 agggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  37709955 agggaatgagcaattttcaaagggagaagagcaattttc 37709993  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 79632 - 79673
Alignment:
Q  51 agggaatgagcaattttgaatgggagaagagcaattttcatc 92  Q
    ||||||| |||||||||||| ||||||||| |||||||||||    
T  79632 agggaataagcaattttgaaagggagaagaacaattttcatc 79673  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 24672844 - 24672880
Alignment:
Q  53 ggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    |||||||  ||||||||||||||||||||||||||||    
T  24672844 ggaatgattaattttgaatgggagaagagcaattttc 24672880  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 54026952 - 54026893
Alignment:
Q  30 aactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattttca 90  Q
    |||| |||||| |||||||| |||||||||||||||| | |  ||||||||||||||||||    
T  54026952 aacttacgttggacattttt-agggaatgagcaatttagcaaaggagaagagcaattttca 54026893  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 16698436 - 16698497
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattt 87  Q
    |||||||||| | ||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  16698436 agttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 16698497  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17672672 - 17672733
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattt 87  Q
    |||||||||| | ||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  17672672 agttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 17672733  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 30279102 - 30279060
Alignment:
Q  44 atttttcagggaatgagcaattttgaatgggagaagagcaatt 86  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  30279102 atttctcagggaatgagcaattttgaaagggagaagagcaatt 30279060  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 35851945 - 35851907
Alignment:
Q  51 agggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  35851945 agggaatgagcaattttgaaagagagaagagcaattttc 35851907  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 5038156 - 5038217
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattt 87  Q
    |||||||| | ||||  |||||||  ||||||||||||||||| | ||||||||||||||||    
T  5038156 agttaacttaggttggtcatttttacgggaatgagcaattttggaagggagaagagcaattt 5038217  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 47086969 - 47087026
Alignment:
Q  27 gttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaa 84  Q
    ||||| |||||||| ||||||||  |||||||||||||| | |||||| |||||||||    
T  47086969 gttaattcacgttgtacatttttaggggaatgagcaattctaaatgggtgaagagcaa 47087026  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 48693222 - 48693282
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaatt 86  Q
    |||||||||||| || ||||  || |||||||||| |||||| || |||||||||||||||    
T  48693222 agttaactcacgctggacataattaagggaatgagtaattttaaaagggagaagagcaatt 48693282  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 4091476 - 4091536
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaatt 86  Q
    ||||||||||| | |||||||||| ||||||||| ||||||| || |||||||||||||||    
T  4091476 agttaactcacatcgaacatttttaagggaatgaacaattttaaaagggagaagagcaatt 4091536  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 17296735 - 17296794
Alignment:
Q  28 ttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattt 87  Q
    |||||||||||||  |||  || |||| ||||||||||||||||||||||||||||||||    
T  17296735 ttaactcacgttgggcataattaaggggatgagcaattttgaatgggagaagagcaattt 17296794  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 36208265 - 36208231
Alignment:
Q  55 aatgagcaattttgaatgggagaagagcaattttc 89  Q
    |||||||||||||| ||||||||||||||||||||    
T  36208265 aatgagcaattttgcatgggagaagagcaattttc 36208231  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 37028121 - 37028085
Alignment:
Q  55 aatgagcaattttgaatgggagaagagcaattttcat 91  Q
    ||||||||||||| || ||||||||||||||||||||    
T  37028121 aatgagcaattttaaaagggagaagagcaattttcat 37028085  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 31847354 - 31847316
Alignment:
Q  53 ggaatgagcaattttgaatgggagaagagcaattttcat 91  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  31847354 ggaatgagcaattttgaaagggagaagagcaattttcat 31847316  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 50441300 - 50441362
Alignment:
Q  28 ttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattttca 90  Q
    ||||||||| |||||||||||| | ||||  || ||||||||| ||||||| |||||||||||    
T  50441300 ttaactcacattgaacatttttaaaggaaaaagtaattttgaaagggagaaaagcaattttca 50441362  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 38433425 - 38433365
Alignment:
Q  28 ttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    |||||| | |||| ||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  38433425 ttaacttatgttggacatttttcagagaatgagcaatttggaat-ggagaagagcaattttc 38433365  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 28197535 - 28197570
Alignment:
Q  57 tgagcaattttgaatgggagaagagcaattttcatc 92  Q
    |||||||||||| |||||||||||||||||||||||    
T  28197535 tgagcaattttgtatgggagaagagcaattttcatc 28197570  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 14612681 - 14612715
Alignment:
Q  57 tgagcaattttgaatgggagaagagcaattttcat 91  Q
    |||||||||||| ||||||||||||||||||||||    
T  14612681 tgagcaattttggatgggagaagagcaattttcat 14612715  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 7078429 - 7078393
Alignment:
Q  53 ggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7078429 ggaatgagcaattttgattgggagaagagcaattttc 7078393  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 8814247 - 8814283
Alignment:
Q  53 ggaatgagcaattttgaatgggagaagagcaattttc 89  Q
    ||||||||||||||||| |||||||||||||||||||    
T  8814247 ggaatgagcaattttgattgggagaagagcaattttc 8814283  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 9194364 - 9194400
Alignment:
Q  52 gggaatgagcaattttgaatgggagaagagcaatttt 88  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9194364 gggagtgagcaattttgaatgggagaagagcaatttt 9194400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 30670589 - 30670545
Alignment:
Q  42 acatttttcagggaatgagcaattttgaatgggagaagagcaatt 86  Q
    |||||||||||| |||||||||||||| | |||||||||||||||    
T  30670589 acatttttcaggaaatgagcaattttgtaagggagaagagcaatt 30670545  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 42980997 - 42981051
Alignment:
Q  26 agttaactcacgttgaacatttttcagggaatgagcaattttgaatgggagaaga 80  Q
    ||||| ||||||||||||||||||   | ||||||||||||| ||||||||||||    
T  42980997 agttagctcacgttgaacatttttagagaaatgagcaattttaaatgggagaaga 42981051  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 43149009 - 43149042
Alignment:
Q  57 tgagcaattttgaatgggagaagagcaattttca 90  Q
    |||||||||||| |||||||||||||||||||||    
T  43149009 tgagcaattttgtatgggagaagagcaattttca 43149042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 2470856 - 2470892
Alignment:
Q  52 gggaatgagcaattttgaatgggagaagagcaatttt 88  Q
    |||||||||||||||||| | ||||||||||||||||    
T  2470856 gggaatgagcaattttgatttggagaagagcaatttt 2470892  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 13340 - 13299
Alignment:
Q  51 agggaatgagcaattttgaatgggagaagagcaattttcatc 92  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  13340 agggaatgaacaattttggatgggagaagtgcaattttcatc 13299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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