View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_low_19 (Length: 318)

Name: NF17943_low_19
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_low_19
NF17943_low_19
[»] chr6 (4 HSPs)
chr6 (211-301)||(21239027-21239115)
chr6 (98-146)||(21238915-21238963)
chr6 (95-146)||(21294361-21294412)
chr6 (32-65)||(21140309-21140342)
[»] scaffold0016 (1 HSPs)
scaffold0016 (43-94)||(53912-53963)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 21239027 - 21239115
Alignment:
Q  211 gtaaagaaattatgtttaagtaataatgaataaacatcctcaattggctctctatttgaccaggatatgttaagttttatgtcagaatctt 301  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||    
T  21239027 gtaaagtaattatgtttaagtaacaatgaataaacatcctcaattgg--ctctatttgaccaggataggttcagttttatgtcagaatctt 21239115  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 21238915 - 21238963
Alignment:
Q  98 aaaaagtcttacaaaaagataagtctttccaaagcatttcaaaaacggc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21238915 aaaaagtcttacaaaaagataagtctttccaaagcatttcaaaaacggc 21238963  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 21294412 - 21294361
Alignment:
Q  95 atcaaaaagtcttacaaaaagataagtctttccaaagcatttcaaaaacggc 146  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  21294412 atcaaaaagtcttacaaaaagataagtctttccaacgcagttcaaaaacggc 21294361  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 21140342 - 21140309
Alignment:
Q  32 tcagaatcttttaagtattgtatcactattagga 65  Q
    ||||||||||||||||||||||||||||||||||    
T  21140342 tcagaatcttttaagtattgtatcactattagga 21140309  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 53912 - 53963
Alignment:
Q  43 taagtattgtatcactattaggaccaacatcatcaacgacagattattccta 94  Q
    ||||||||||||||||||||||| ||||||||||| | ||| ||||||||||    
T  53912 taagtattgtatcactattaggagcaacatcatcagccacaaattattccta 53963  T

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