View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_2 (Length: 730)
Name: NF17943_low_2
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 337 - 713
Target Start/End: Complemental strand, 9064091 - 9063715
Alignment:
| Q |
337 |
tttctaacaacatacctgtgaaataacaccaagcacaccaagtgatactttagctgcattaaaatcttcattgttttgttcattaagaatctcaacttta |
436 |
Q |
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| T |
9064091 |
tttctaacaacatacctgtgaaataacaccaagcacaccaagtgatactttagctgcattaaaatcttcattgttttgttcattaagaatctcaacttta |
9063992 |
T |
|
| Q |
437 |
gcatatccatcgtcagaatccgaaggcctaacgatccttatctcgacaacatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcac |
536 |
Q |
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| T |
9063991 |
gcatatccatcgtcagaatccgaaggcctaacgatccttatctcgacaacatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcac |
9063892 |
T |
|
| Q |
537 |
cagttccgatcattccacctattgttaaaccataccaatatggtgtatatggtaaagccaaaccattttttgaggcttcattaataatttgcttcaatgt |
636 |
Q |
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| T |
9063891 |
cagttccgatcattccacctattgttaaaccataccaatatggtgtatatggtaaagccaaaccattttttgaggcttcattaataatttgcttcaatgt |
9063792 |
T |
|
| Q |
637 |
cacaccactctccaatgttattgttttttcttccacatcaatttttactaccttgttgagatatttcgtgcttatta |
713 |
Q |
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| T |
9063791 |
cacaccactctccaatgttattgttttttcttccacatcaatttttactaccttgttgagatatttcgtgcttatta |
9063715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 9064377 - 9064175
Alignment:
| Q |
47 |
agagactaatgacaatttatttgatgccctacaagtcaagaactgaattgaaaacttatttaattcgcaacccatgaatcattattaaaaatttgggtta |
146 |
Q |
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| T |
9064377 |
agagactaatgacaatttatttgatgccctacaagtcaagaactgaattgaaaacttatttaattcgcaacccatgaatcattattaaaaatttgggtta |
9064278 |
T |
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| Q |
147 |
ctaa-nnnnnnngaagggaaggttactaatttttaatcaaggacatatttatttggttggagctaatttcggttcaccaagcatgtgaggattcagatcc |
245 |
Q |
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| T |
9064277 |
ctaagtttttttgaagggaaggttactaa-ttttaatcaaggaca----tatttggttggagctaatttcagttcaccaagcatgtgaggattcagatcc |
9064183 |
T |
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| Q |
246 |
aagcatat |
253 |
Q |
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|||||||| |
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| T |
9064182 |
aagcatat |
9064175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 349 - 535
Target Start/End: Complemental strand, 9057955 - 9057769
Alignment:
| Q |
349 |
tacctgtgaaataacaccaagcacaccaagtgatactttagctgcattaaaatcttcattgttttgttcattaagaatctcaactttagcatatccatcg |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9057955 |
tacctgtgaaataacaccaagcacaccaagtgatactttaactgcattaaaatcttcattgttttgttcattaagaatatcaactttagcatatccatct |
9057856 |
T |
|
| Q |
449 |
tcagaatccgaaggcctaacgatccttatctcgacaacatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagca |
535 |
Q |
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||| |||| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
9057855 |
tcataatctgaaggtctaacaatccttatctccacaacataatcatgaacataacttcctttcccccacaatgtgcttccatgagca |
9057769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 485 - 584
Target Start/End: Original strand, 493690 - 493789
Alignment:
| Q |
485 |
acatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtat |
584 |
Q |
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||||| |||||||| ||||||||||| ||| ||||||| |||||||| |||||||| | || | ||||| || |||||||| ||||||||||||||| |
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| T |
493690 |
acatactcatgaacagcacttcctttaccccacaatgtacttccatgtgcaccagtgctaattaggccaccaatggttaaaccccaccaatatggtgtat |
493789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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