View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17943_low_20 (Length: 290)

Name: NF17943_low_20
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17943_low_20
NF17943_low_20
[»] chr5 (1 HSPs)
chr5 (1-290)||(27190703-27190992)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 27190703 - 27190992
Alignment:
Q  1 attggaatcttataaggtctcactaacattggcttcttccatctcaaccaaagaaaagaagcaaattccaatatcatacccaaactatacaaaaaattag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27190703 attggaatcttataaggtctcactaacattggcttcttccatctcaaccaaagaaaagaagcaaattccaatatcatacccaaactatacaaaaaattag 27190802  T
Q  101 ctgatgaaattatatcagtgaaatccatataagaaacaccaattgttatcaaagtagataccaaaatacccaaccaaggtgtattaaaccattttgacct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27190803 ctgatgaaattatatcagtgaaatccatataagaaacaccaattgttatcaaagtagataccaaaatacccaaccaaggtgtattaaaccattttgacct 27190902  T
Q  201 aactccacaaacctttggcaaaattccaatttcagccatacccaaaacttgataagcactactacttaatcgggcttcaaaaagcccaat 290  Q
     |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27190903 cactccacaaaacttgggcaaaattccaatttcagccatacccaaaacttgataagcactactacttaattgggcttcaaaaagcccaat 27190992  T

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