View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17943_low_24 (Length: 259)
Name: NF17943_low_24
Description: NF17943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17943_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 9063941 - 9063715
Alignment:
| Q |
16 |
atagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtatat |
115 |
Q |
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| T |
9063941 |
atagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtatat |
9063842 |
T |
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| Q |
116 |
ggtaaagccaaaccattttttgaggcttcattaataatttgcttcaatgtcacaccactctccaatgttattgttttttcttccacatcaatttttacta |
215 |
Q |
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| T |
9063841 |
ggtaaagccaaaccattttttgaggcttcattaataatttgcttcaatgtcacaccactctccaatgttattgttttttcttccacatcaatttttacta |
9063742 |
T |
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| Q |
216 |
ccttgttgagatatttcgtgcttatta |
242 |
Q |
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| T |
9063741 |
ccttgttgagatatttcgtgcttatta |
9063715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 9057802 - 9057769
Alignment:
| Q |
31 |
acttcctttccccgacaatgtgcttccatgagca |
64 |
Q |
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| T |
9057802 |
acttcctttcccccacaatgtgcttccatgagca |
9057769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 493696 - 493789
Alignment:
| Q |
20 |
tcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtat |
113 |
Q |
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| T |
493696 |
tcatgaacagcacttcctttaccccacaatgtacttccatgtgcaccagtgctaattaggccaccaatggttaaaccccaccaatatggtgtat |
493789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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